RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MIDNQ504T8 468 aa19.69■□□□□ 0.74
CPSF1-202ENST00000527827 TBPL2Q6SJ96 375 aa19.69■□□□□ 0.74
CPSF1-202ENST00000527827 SPATC1Q76KD6 591 aa19.69■□□□□ 0.74
CPSF1-202ENST00000527827 VTCN1Q7Z7D3 282 aa19.69■□□□□ 0.74
CPSF1-202ENST00000527827 RNF113BQ8IZP6 322 aaKnown RBP19.69■□□□□ 0.74
CPSF1-202ENST00000527827 OR13G1Q8NGZ3 307 aa19.69■□□□□ 0.74
CPSF1-202ENST00000527827 ACOT11Q8WXI4 607 aaPredicted RBP19.69■□□□□ 0.74
CPSF1-202ENST00000527827 NEIL1Q96FI4 390 aaPredicted RBP19.69■□□□□ 0.74
CPSF1-202ENST00000527827 PRDM13Q9H4Q3 707 aa19.69■□□□□ 0.74
CPSF1-202ENST00000527827 WNK1Q9H4A3 2382 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 IGHV3-64DA0A0J9YX35 117 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 KIR2DS1A0A191URI9 304 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 J3QW42 95 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 XKRYO14609 159 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 MLNRO43193 412 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 HOXA3O43365 443 aaPredicted RBP19.68■□□□□ 0.74
CPSF1-202ENST00000527827 GPR4P46093 362 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 LSM6P62312 80 aaKnown RBP19.68■□□□□ 0.74
CPSF1-202ENST00000527827 DEFB112Q30KQ8 113 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 ZNF404Q494X3 552 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 ZBED5Q49AG3 693 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 TMPRSS11FQ6ZWK6 438 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 MBOAT2Q6ZWT7 520 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 OR2T12Q8NG77 320 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 RASD2Q96D21 266 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 PLEKHA8Q96JA3 519 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 ZNF570Q96NI8 536 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 TMEM120AQ9BXJ8 343 aa19.68■□□□□ 0.74
CPSF1-202ENST00000527827 COA3Q9Y2R0 106 aaPredicted RBP19.68■□□□□ 0.74
CPSF1-202ENST00000527827 BBIP1A8MTZ0 92 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 IMPA2O14732 288 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 RER1O15258 196 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 FSTL3O95633 263 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 IFNW1P05000 195 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 PMELP40967 661 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 SRP9P49458 86 aaKnown RBP19.67■□□□□ 0.74
CPSF1-202ENST00000527827 RGS6P49758 472 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 SRSF4Q08170 494 aaKnown RBP19.67■□□□□ 0.74
CPSF1-202ENST00000527827 KLF10Q13118 480 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 ZNF181Q2M3W8 571 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 FAM201AQ5SY85 155 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 ZNF730Q6ZMV8 503 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 MOGAT3Q86VF5 341 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 OR10S1Q8NGN2 331 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 LZICQ8WZA0 190 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 SLC30A2Q9BRI3 323 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 SYT4Q9H2B2 425 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 GMPR2Q9P2T1 348 aaKnown RBP19.67■□□□□ 0.74
CPSF1-202ENST00000527827 ATPIF1Q9UII2 106 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 NOTCH1P46531 2555 aa19.67■□□□□ 0.74
CPSF1-202ENST00000527827 ELOVL7A1L3X0 281 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 F5H5P2 479 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 SLC16A7O60669 478 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 KHDRBS3O75525 346 aaKnown RBP19.66■□□□□ 0.74
CPSF1-202ENST00000527827 BRD3OSQ6XYD6 125 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 GLB1L2Q8IW92 636 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 FITM2Q8N6M3 262 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 OR8B3Q8NGG8 313 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 ZNF582Q96NG8 517 aaPredicted RBP19.66■□□□□ 0.74
CPSF1-202ENST00000527827 OR8B2Q96RD0 313 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 NUDT16L1Q9BRJ7 211 aaKnown RBP19.66■□□□□ 0.74
CPSF1-202ENST00000527827 RERGLQ9H628 205 aa19.66■□□□□ 0.74
CPSF1-202ENST00000527827 A0A1B0GWJ7 208 aa19.65■□□□□ 0.74
CPSF1-202ENST00000527827 FAM181BA6NEQ2 426 aa19.65■□□□□ 0.74
CPSF1-202ENST00000527827 SELEP16581 610 aa19.65■□□□□ 0.74
CPSF1-202ENST00000527827 PITPNBP48739 271 aa19.65■□□□□ 0.74
CPSF1-202ENST00000527827 KRR1Q13601 381 aaKnown RBP19.65■□□□□ 0.74
CPSF1-202ENST00000527827 OCLNQ16625 522 aa19.65■□□□□ 0.74
CPSF1-202ENST00000527827 LYPD2Q6UXB3 125 aa19.65■□□□□ 0.74
CPSF1-202ENST00000527827 OR5L1Q8NGL2 311 aa19.65■□□□□ 0.74
CPSF1-202ENST00000527827 APOBEC3DQ96AK3 386 aaPredicted RBP19.65■□□□□ 0.74
CPSF1-202ENST00000527827 NMNAT1Q9HAN9 279 aaPredicted RBP19.65■□□□□ 0.74
CPSF1-202ENST00000527827 VSX1Q9NZR4 365 aaPredicted RBP19.65■□□□□ 0.74
CPSF1-202ENST00000527827 LOC100653049A0A140TA62 436 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 IQCF6A8MYZ5 107 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 HMGB1P1B2RPK0 211 aaPredicted RBP19.64■□□□□ 0.73
CPSF1-202ENST00000527827 SRRM5B3KS81 715 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 PTP4A3O75365 173 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 KRT34O76011 436 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 FGF12P61328 243 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 HIST1H3AP68431 136 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 KCNMB1Q16558 191 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 HIST2H3PS2Q5TEC6 136 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 HIST2H3AQ71DI3 136 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 KIR3DL3Q8N743 410 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 BHLHE23Q8NDY6 225 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 WFDC12Q8WWY7 111 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 ZDHHC16Q969W1 377 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 CDADC1Q9BWV3 514 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 SAR1AQ9NR31 198 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 GID8Q9NWU2 228 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 CMTM6Q9NX76 183 aa19.64■□□□□ 0.73
CPSF1-202ENST00000527827 PDP1Q9P0J1 537 aaPredicted RBP19.64■□□□□ 0.73
CPSF1-202ENST00000527827 LRRC30A6NM36 301 aa19.63■□□□□ 0.73
CPSF1-202ENST00000527827 KNG1P01042 644 aa19.63■□□□□ 0.73
CPSF1-202ENST00000527827 SDHAP31040 664 aa19.63■□□□□ 0.73
CPSF1-202ENST00000527827 RELBQ01201 579 aa19.63■□□□□ 0.73
CPSF1-202ENST00000527827 RSPO1Q2MKA7 263 aaPredicted RBP19.63■□□□□ 0.73
CPSF1-202ENST00000527827 WDR25Q64LD2 544 aaPredicted RBP19.63■□□□□ 0.73
CPSF1-202ENST00000527827 ZNF841Q6ZN19 808 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms