RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	ZFYVE9	O95405	1425 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	NOS1	P29475	1434 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ADAMTS13	Q76LX8	1427 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	KIF1B	O60333	1816 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	IGLV3-16	A0A075B6K0	115 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553		A0A0J9YYE9	177 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	TMEM120B	A0PK00	339 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553		F6UB75	175 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ZNF701	M0R085	212 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	MAGEB4	O15481	346 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	SPOP	O43791	374 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	AIRE	O43918	545 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	NPIPB7	O75200	414 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	KLF8	O95600	359 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	SNAI1	O95863	264 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	TRBC1	P01850	177 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	PNMA6A	P0CW24	399 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	CPN2	P22792	545 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	U2AF2	P26368	475 aa	Known RBP eCLIP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	CTRL	P40313	264 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	RPS21	P63220	83 aa	Known RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	IRF8	Q02556	426 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	SLC25A11	Q02978	314 aa	Known RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	LRRC63	Q05C16	580 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	TCP10	Q12799	353 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	EBI3	Q14213	229 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	OR7A5	Q15622	319 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ZBED5	Q49AG3	693 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ANKRD22	Q5VYY1	191 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	LCN12	Q6JVE5	192 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ABHD13	Q7L211	337 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	CAMK2N1	Q7Z7J9	78 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	MREG	Q8N565	214 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	NPB	Q8NG41	125 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	OR5B3	Q8NH48	314 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	BLOC1S5	Q8TDH9	187 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	DUS3L	Q96G46	650 aa	Known RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	TSSK3	Q96PN8	268 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	OR5B12	Q96R08	314 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	LINC00597	Q9H2U6	94 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	NXF3	Q9H4D5	531 aa	Known RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	C8orf33	Q9H7E9	229 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	UGT1A7	Q9HAW7	530 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	UGT1A8	Q9HAW9	530 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	CYP3A43	Q9HB55	503 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ZC4H2	Q9NQZ6	224 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	STOX2	Q9P2F5	926 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ZNF282	Q9UDV7	671 aa	Predicted RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	KCNE3	Q9Y6H6	103 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	2.87	□□□□□ -1.95
CD44-223	ENST00000526553	GLI3	P10071	1580 aa		2.87	□□□□□ -1.95
CD44-223	ENST00000526553	ABCC5	O15440	1437 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	DCC	P43146	1447 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	ADGRL3	Q9HAR2	1447 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553		E9PCH4	1651 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	PLCH1	Q4KWH8	1693 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	C1orf167	Q5SNV9	1468 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	RPRD2	Q5VT52	1461 aa	Known RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	RALGAPB	Q86X10	1494 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	SPHKAP	Q2M3C7	1700 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	XRN1	Q8IZH2	1706 aa	Known RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	TEX46	H3BTG2	121 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	TRAF3IP2	O43734	574 aa	Predicted RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	FKBP6	O75344	327 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	FCN3	O75636	299 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	SRP72	O76094	671 aa	Known RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	RAB3D	O95716	219 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	LSM8	O95777	96 aa	Known RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	AIFM1	O95831	613 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	IGHV4-34	P06331	123 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	CRYGC	P07315	174 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	RET	P07949	1114 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	ZDHHC11B	P0C7U3	371 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	FOLR1	P15328	257 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	SRM	P19623	302 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	F2R	P25116	425 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	CD82	P27701	267 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	GPX4	P36969	197 aa	Predicted RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	CSNK1D	P48730	415 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	PPOX	P50336	477 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	CRISP1	P54107	249 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	FGF8	P55075	233 aa	Predicted RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	NUTF2	P61970	127 aa	Known RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	SP4	Q02446	784 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	IFT88	Q13099	833 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	STK38	Q15208	465 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	THEM4	Q5T1C6	240 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	UBE2U	Q5VVX9	321 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	COX15	Q7KZN9	410 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	OAF	Q86UD1	273 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	INO80E	Q8NBZ0	244 aa	Predicted RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	PROKR2	Q8NFJ6	384 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	ECHDC3	Q96DC8	303 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	CFAP53	Q96M91	514 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	CSPG4P5	Q96PW8	444 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	GABARAPL3	Q9BY60	117 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	MRPL37	Q9BZE1	423 aa	Known RBP	2.86	□□□□□ -1.95
CD44-223	ENST00000526553	PIGU	Q9H490	435 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	CLMP	Q9H6B4	373 aa		2.86	□□□□□ -1.95
CD44-223	ENST00000526553	LZTFL1	Q9NQ48	299 aa		2.86	□□□□□ -1.95

Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms