RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 RNF128Q8TEB7 428 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 SLAMF9Q96A28 289 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 METTL9Q9H1A3 318 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 ZFP64Q9NPA5 681 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 SMCO4Q9NRQ5 59 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 FRG2CA6NGY1 282 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CYR61O00622 381 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 TUBG1P23258 451 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CPT2P23786 658 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CHATP28329 748 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CX3CR1P49238 355 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 OR52W1Q6IF63 320 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 ALKBH2Q6NS38 261 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 OR10Z1Q8NGY1 313 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 SHDQ96IW2 340 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 PFDN5Q99471 154 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 NUDT9Q9BW91 350 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF768Q9H5H4 540 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CHST11Q9NPF2 352 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 SBF1O95248 1867 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 SDCBPO00560 298 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 EPPINO95925 133 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 RECKO95980 971 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CAPZBP47756 277 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 GFERP55789 205 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 PPP1CAP62136 330 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 SRSF5Q13243 272 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CNN3Q15417 329 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 B3GNTL1Q67FW5 361 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 TRILQ7L0X0 811 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 OR2W3Q7Z3T1 314 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 HSD17B13Q7Z5P4 300 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 PRSS35Q8N3Z0 413 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 TMEM52Q8NDY8 209 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 BPIFCQ8NFQ6 507 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 C2CD4CQ8TF44 421 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 ABI3Q9P2A4 366 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 B3GALT5Q9Y2C3 310 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 NUDT19A8MXV4 375 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 IFNA2P01563 188 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 TMIGD3P0DMS9 266 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 APOBEC1P41238 236 aaKnown RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 ZNF674Q2M3X9 581 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 CHRDL2Q6WN34 429 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 BPHLQ86WA6 291 aaPredicted RBP7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 OR11G2Q8NGC1 345 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 ULBP2Q9BZM5 246 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 FAM60AQ9NP50 221 aa7.59□□□□□ -1.19
LIMCH1-216ENST00000512820 TRAV8-7A0A075B6U6 113 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 NRG2O14511 850 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 B3GALNT1O75752 331 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 BPNT1O95861 308 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 CFDP00746 253 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 DPP4P27487 766 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 NANOS3P60323 173 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PRAMEF20Q5VT98 475 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 FBXW12Q6X9E4 464 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 BVESQ8NE79 360 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 OR10AC1Q8NH08 325 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ZPLD1Q8TCW7 415 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PIGTQ969N2 578 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF775Q96BV0 537 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 VSTM2LQ96N03 204 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 RPP25Q9BUL9 199 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PBOV1Q9GZY1 135 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PARP12Q9H0J9 701 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ZCCHC4Q9H5U6 513 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ALKBH4Q9NXW9 302 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ASH2LQ9UBL3 628 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC5A6Q9Y289 635 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 TRPM6Q9BX84 2022 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 OR4C45A6NMZ5 311 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 HRKO00198 91 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 TBPP20226 339 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ACAA2P42765 397 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ATP1B3P54709 279 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 OR1D5P58170 312 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF117Q03924 483 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PLP2Q04941 152 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 MALLQ13021 153 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 HMGN3Q15651 99 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 LAMTOR1Q6IAA8 161 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 TMEM71Q6P5X7 295 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 NPSR1Q6W5P4 371 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 OR14L1PQ8NHC6 308 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 FAM174AQ8TBP5 190 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR119Q8TDV5 335 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 EDAQ92838 391 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 GAS2L1Q99501 681 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 TCEAL7Q9BRU2 100 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 KCNS2Q9ULS6 477 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 ICAM5Q9UMF0 924 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PCDHGA5Q9Y5G8 931 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 RPA2P15927 270 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 CXCL2P19875 107 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 CD80P33681 288 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 CSNK1EP49674 416 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 MFAP5Q13361 173 aa7.58□□□□□ -1.2
LIMCH1-216ENST00000512820 PPP1R1AQ13522 171 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms