RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CDKN1BP46527 198 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 DECR1Q16698 335 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 C1orf185Q5T7R7 199 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 CD300LGQ6UXG3 332 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC35F2Q8IXU6 374 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 CBARPQ8N350 705 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 OR52E2Q8NGJ4 325 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 GPX8Q8TED1 209 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 RSC1A1Q92681 617 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 C16orf58Q96GQ5 468 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 KLHL28Q9NXS3 571 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 CYP8B1Q9UNU6 501 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 CHTOPQ9Y3Y2 248 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 GLOD5A6NK44 160 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF705FA8MVS1 300 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 K7EPK0 472 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 WNT10BO00744 389 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 PLRG1O43660 514 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 KDELR3O43731 214 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 CIDEAO60543 219 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 NSA2O95478 260 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF705DP0CH99 300 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF705BP0CI00 300 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 AKT2P31751 481 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 BRS3P32247 399 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 UCP3P55916 312 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC37A1P57057 533 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 CYCSP99999 105 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 C2orf76Q3KRA6 126 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 FAM71E2Q8N5Q1 922 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 OR1L6Q8NGR2 347 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 Q96M85 177 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 STACQ99469 402 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 PBDC1Q9BVG4 233 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 CHST11Q9NPF2 352 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 ZDHHC3Q9NYG2 299 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM238LA0A1B0GVL6 79 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 RAB27BO00194 218 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 GSTP1P09211 210 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 OR5H8P0DN80 308 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 HLA-GP17693 338 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 RPL4P36578 427 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 SOX8P57073 446 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 PRSS54Q6PEW0 395 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 SLCO4C1Q6ZQN7 724 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM183AQ8IXX5 376 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 C17orf78Q8N4C9 275 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 OR13C3Q8NGS6 347 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 SYT3Q9BQG1 590 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 NEUROD4Q9HD90 331 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 UTRNP46939 3433 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 CCDC85CA6NKD9 419 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 SRPX2O60687 465 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 STK17BO94768 372 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 GCGP01275 180 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 CSTBP04080 98 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF735P0CB33 412 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 MC3RP41968 323 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 TNFSF10P50591 281 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 PMS2P11Q13670 270 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 C1orf189Q5VU69 101 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 CHST9Q7L1S5 443 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 COMMD1Q8N668 190 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 LILRA3Q8N6C8 439 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM229BQ8NBD8 167 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 SUN3Q8TAQ9 357 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 DNAJB3Q8WWF6 145 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 ULBP3Q9BZM4 244 aa10.86□□□□□ -0.67
LIMCH1-213ENST00000511496 TRBV6-7A0A0A0MS04 114 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 P2RX6O15547 441 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 GPRIN2O60269 458 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 ERAL1O75616 437 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 CST4P01036 141 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 RPS2P15880 293 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 PDX1P52945 283 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 TAS2R38P59533 333 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF584Q8IVC4 421 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF100Q8IYN0 542 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF775Q96BV0 537 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 SCRT1Q9BWW7 348 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 PLEKHA2Q9HB19 425 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 PPIAL4AQ9Y536 164 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 CEP350Q5VT06 3117 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 TMEM202A6NGA9 273 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 K7ERQ8 282 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 M0QZQ0 153 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 LILRB3O75022 631 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 PI3P19957 117 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 PPP1CCP36873 323 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 IQCJQ1A5X6 159 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 LRRC73Q5JTD7 316 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 NBPF12Q5TAG4 269 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 CNN2Q99439 309 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 HAO2Q9NYQ3 351 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 USP36Q9P275 1121 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 FBXL17Q9UF56 701 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 ICKQ9UPZ9 632 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 CASP8AP2Q9UKL3 1982 aa10.85□□□□□ -0.67
LIMCH1-213ENST00000511496 TRBV5-4A0A0C4DH59 114 aa10.84□□□□□ -0.67
LIMCH1-213ENST00000511496 KLF4O43474 513 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms