RNA–Protein interactions for RNA: ENST00000505804.1

TOPBP1-204, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 2

Gene TOPBP1, Length 472 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-204ENST00000505804 OR8U9P0C7N5 309 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 ATF6P18850 670 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 CELP19835 753 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 U2AF2P26368 475 aaKnown RBP eCLIP2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 CXCL12P48061 93 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 RAB10P61026 200 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 PPP1CBP62140 327 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 PITPNAQ00169 270 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 SP4Q02446 784 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 TGM3Q08188 693 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 ZNF816Q0VGE8 651 aaPredicted RBP2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 SRSF5Q13243 272 aaKnown RBP2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 ALKBH6Q3KRA9 238 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 HSP90AB3PQ58FF7 597 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 AVPI1Q5T686 147 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 UBE2UQ5VVX9 321 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 LRRC66Q68CR7 880 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 NPSR1Q6W5P4 371 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 C12orf54Q6X4T0 127 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 SNX20Q7Z614 316 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 CDKL3Q8IVW4 592 aaPredicted RBP2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 LYPD1Q8N2G4 141 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 COX18Q8N8Q8 333 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 OR6N1Q8NGY5 312 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 LILRB4Q8NHJ6 448 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 CIRBP-AS1Q8TBR5 109 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 TMEM230Q96A57 120 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 COL21A1Q96P44 957 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 PLIN2Q99541 437 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 C20orf24Q9BUV8 137 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 MTFP1Q9UDX5 166 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 TNKS1BP1Q9C0C2 1729 aaKnown RBP2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 GPR179Q6PRD1 2367 aa2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 AHDC1Q5TGY3 1603 aaPredicted RBP2.16□□□□□ -2.06
TOPBP1-204ENST00000505804 IGHV1OR15-9A0A0B4J2B8 117 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 ZNF850A8MQ14 1090 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 H0YJW9 148 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 K7EM74 188 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 SOCS1O15524 211 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 CHST1O43916 411 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 FLOT1O75955 427 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 ERGP11308 486 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 CRISP1P54107 249 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 MPV17L2Q567V2 206 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 TCEAL5Q5H9L2 206 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 CARD17Q5XLA6 110 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 SLC16A13Q7RTY0 426 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 MRPL55Q7Z7F7 128 aaKnown RBP2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 MYOCDQ8IZQ8 938 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 C11orf72Q8NBR9 251 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 CHST4Q8NCG5 386 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 OR52E2Q8NGJ4 325 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 LYPD6BQ8NI32 183 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 TCEAL3Q969E4 200 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 HSD17B10Q99714 261 aaKnown RBP2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 LZTS2Q9BRK4 669 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 ULBP2Q9BZM5 246 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 FGF23Q9GZV9 251 aaPredicted RBP2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 RETNQ9HD89 108 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 NMRK1Q9NWW6 199 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 PTTG3PQ9NZH4 202 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 SLC17A4Q9Y2C5 497 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 RRP15Q9Y3B9 282 aaKnown RBP2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 TSPOAP1O95153 1857 aa2.15□□□□□ -2.07
TOPBP1-204ENST00000505804 PALLDQ8WX93 1383 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 NINLQ9Y2I6 1382 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 TRAV19A0A0A6YYK7 116 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 DNASE2O00115 360 aaPredicted RBP2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 AP3B1O00203 1094 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 NVLO15381 856 aaKnown RBP2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 ERLIN1O75477 346 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 IL4P05112 153 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 MYL2P10916 166 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 BCKDHBP21953 392 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 GTF2E2P29084 291 aaKnown RBP2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 RPS23P62266 143 aaKnown RBP2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 SEMG2Q02383 582 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 LIPEQ05469 1076 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 IFT88Q13099 833 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 PIGHQ14442 188 aaPredicted RBP2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 ZNF266Q14584 549 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 TRAM2Q15035 370 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 PSMD5Q16401 504 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 LCE1CQ5T751 118 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 LCE1BQ5T7P3 118 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 APH1BQ8WW43 257 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 OSBPL11Q9BXB4 747 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 FAM192AQ9GZU8 254 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 BEX1Q9HBH7 125 aa2.14□□□□□ -2.07
TOPBP1-204ENST00000505804 TRBV9A0A0B4J1U6 114 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 IGKV1-8A0A0C4DH67 115 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 CCDC169A6NNP5 214 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 A8MUU9 505 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 H7C1H1 209 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 K7EMT4 169 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 SCAMP2O15127 329 aaKnown RBP2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 RAD51CO43502 376 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 CDC40O60508 579 aaKnown RBP eCLIP2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 HUS1O60921 280 aa2.13□□□□□ -2.07
TOPBP1-204ENST00000505804 SEMA3DO95025 777 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms