RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 CCDC59Q9P031 241 aaKnown RBP1.83□□□□□ -2.12
VPS50-219ENST00000495039 MARCOQ9UEW3 520 aaPredicted RBP1.83□□□□□ -2.12
VPS50-219ENST00000495039 ENOPH1Q9UHY7 261 aa1.83□□□□□ -2.12
VPS50-219ENST00000495039 AHDC1Q5TGY3 1603 aaPredicted RBP1.82□□□□□ -2.12
VPS50-219ENST00000495039 TRAV19A0A0A6YYK7 116 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 IGHV1OR15-9A0A0B4J2B8 117 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 C17orf51A8MQB3 221 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 CLDN11O75508 207 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 REM1O75628 298 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 IGHDP01880 384 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 ARG1P05089 322 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 CTSLP07711 333 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 OR8U9P0C7N5 309 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 ZNF688P0C7X2 276 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 ZNF806P0C7X5 589 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 ERGP11308 486 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 U2AF2P26368 475 aaKnown RBP eCLIP1.82□□□□□ -2.12
VPS50-219ENST00000495039 PBLDP30039 288 aaPredicted RBP1.82□□□□□ -2.12
VPS50-219ENST00000495039 PPP1CBP62140 327 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 SP4Q02446 784 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 IFT88Q13099 833 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 CHRNA6Q15825 494 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 PSMD5Q16401 504 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 MPV17L2Q567V2 206 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 DNLZQ5SXM8 178 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 ARMC12Q5T9G4 340 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 NPSR1Q6W5P4 371 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 MRPL55Q7Z7F7 128 aaKnown RBP1.82□□□□□ -2.12
VPS50-219ENST00000495039 OSR2Q8N2R0 312 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 GTPBP8Q8N3Z3 284 aaPredicted RBP1.82□□□□□ -2.12
VPS50-219ENST00000495039 NPWQ8N729 165 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 COX18Q8N8Q8 333 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 GATSQ8NAP1 163 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 OR10AD1Q8NGE0 317 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 OR9A2Q8NGT5 310 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 ZNF488Q96MN9 340 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 TBL1YQ9BQ87 522 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 CCDC77Q9BR77 488 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 TIMM29Q9BSF4 260 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 C20orf24Q9BUV8 137 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 OR52D1Q9H346 318 aa1.82□□□□□ -2.12
VPS50-219ENST00000495039 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.82□□□□□ -2.12
VPS50-219ENST00000495039 SOCS1O15524 211 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CHST10O43529 356 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 EIF4E2O60573 245 aaKnown RBP1.81□□□□□ -2.12
VPS50-219ENST00000495039 SEMA3DO95025 777 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CD74P04233 296 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 SERPINE2P07093 398 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CT45A6P0DMU7 189 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CT45A5P0DMU8 189 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CT45A7P0DMV0 189 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 MYL2P10916 166 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 IL1RNP18510 177 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 ATF6P18850 670 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CELP19835 753 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 KIR3DL2P43630 455 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 PRRX1P54821 245 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 PRMT2P55345 433 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 TGM3Q08188 693 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 SELENBP1Q13228 472 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CT45A1Q5HYN5 189 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CCDC183Q5T5S1 534 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 PRR9Q5T870 116 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 PRAMEF20Q5VT98 475 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CARD17Q5XLA6 110 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 TTC23LQ6PF05 361 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 ZYG11AQ6WRX3 759 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 SLC16A13Q7RTY0 426 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 TMEM256Q8N2U0 113 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CBR4Q8N4T8 237 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 OR4C5Q8NGB2 326 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 OR52E2Q8NGJ4 325 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 CT45A3Q8NHU0 189 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 N4BP2L2Q92802 583 aaPredicted RBP1.81□□□□□ -2.12
VPS50-219ENST00000495039 DCPSQ96C86 337 aaKnown RBP1.81□□□□□ -2.12
VPS50-219ENST00000495039 SULT4A1Q9BR01 284 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 C1orf198Q9H425 327 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 ANKRA2Q9H9E1 313 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 SLC38A10Q9HBR0 1119 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 TSSC4Q9Y5U2 329 aaPredicted RBP1.81□□□□□ -2.12
VPS50-219ENST00000495039 PALLDQ8WX93 1383 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 YEATS2Q9ULM3 1422 aa1.81□□□□□ -2.12
VPS50-219ENST00000495039 COL27A1Q8IZC6 1860 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 TRAV6A0A075B6T7 132 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 CCDC169A6NNP5 214 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 H0YJW9 148 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 H7C417 338 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 DNASE2O00115 360 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 AP3B1O00203 1094 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 FLOT1O75955 427 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 SLC22A5O76082 557 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 OTX1P32242 354 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 SYNJ2BPP57105 145 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 RGS8P57771 180 aaPredicted RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 RPS23P62266 143 aaKnown RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 CRADDP78560 199 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 SRSF5Q13243 272 aaKnown RBP1.8□□□□□ -2.12
VPS50-219ENST00000495039 TRAM2Q15035 370 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 PGGHGQ32M88 737 aa1.8□□□□□ -2.12
VPS50-219ENST00000495039 HSP90AB3PQ58FF7 597 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms