RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 A0A1W2PNU3 283 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 CDX4O14627 284 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 KDM4BO94953 1096 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 B3GALT5-AS1P59052 145 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 CSNK2A1P68400 391 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 GABREP78334 506 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 MAB21L1Q13394 359 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 POU4F3Q15319 338 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 FCN2Q15485 313 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 RHOUQ7L0Q8 258 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 LYPD6Q86Y78 171 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 LIX1LQ8IVB5 337 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 ESX1Q8N693 406 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 NAA11Q9BSU3 229 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 ACTR6Q9GZN1 396 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 MED28Q9H204 178 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 PNRC2Q9NPJ4 139 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 P4HTMQ9NXG6 502 aa18.7■□□□□ 0.58
CCDC88B-208ENST00000492980 SDK2Q58EX2 2172 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 LOC390937A0A1W2PQ73 354 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 DCDC2BA2VCK2 349 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 RGS13O14921 159 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 VAMP5O95183 116 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 SERPINA7P05543 415 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 HSD11B1P28845 292 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 TOMM20Q15388 145 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 ACER2Q5QJU3 275 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 CDCP2Q5VXM1 449 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 TMEM54Q969K7 222 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 FGGYQ96C11 551 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 ZNF385AQ96PM9 386 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 OR51J1Q9H342 316 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 PAQR5Q9NXK6 330 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 FOXJ2Q9P0K8 574 aa18.69■□□□□ 0.58
CCDC88B-208ENST00000492980 TNFSF11O14788 317 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 C1QBP02746 253 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 NR2C1P13056 603 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 SRD5A2P31213 254 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 CSNK1A1P48729 337 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 CDK10Q15131 360 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 PHYHD1Q5SRE7 291 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 NKAIN3Q8N8D7 197 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 OR9K2Q8NGE7 335 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 GIMAP1Q8WWP7 306 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 NIPAL2Q9H841 368 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 MOB1AQ9H8S9 216 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 BOLA1Q9Y3E2 137 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 RHBDD3Q9Y3P4 386 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 NPIPA2E9PIF3 369 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 NPIPA3F8WFD2 350 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 H7C417 338 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 RER1O15258 196 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 SYT7O43581 403 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 PSMB1P20618 241 aaKnown RBP18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 STOMP27105 288 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 GZMKP49863 264 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 C1orf100Q5SVJ3 147 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 JAGN1Q8N5M9 183 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 SRXN1Q9BYN0 137 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 ATG5Q9H1Y0 275 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 PLSCR3Q9NRY6 295 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 MTFP1Q9UDX5 166 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 NCKAP5O14513 1909 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 BDP1A6H8Y1 2624 aa18.68■□□□□ 0.58
CCDC88B-208ENST00000492980 TRAV18A0A075B6X5 111 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 FAM172BPA6NC97 362 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 ALDOBP05062 364 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 RCVRNP35243 200 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 ZNF133P52736 654 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 TAF13Q15543 124 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 C10orf128Q5T292 105 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 LUZP2Q86TE4 346 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 TMEM123Q8N131 208 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 OR1J2Q8NGS2 313 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 OR6N1Q8NGY5 312 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 ADAT3Q96EY9 351 aaPredicted RBP18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 FAM210AQ96ND0 272 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 R4GN57 208 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 A0A1B0GTI1 187 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 LRRC3CA6NJW4 275 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 GJE1A6NN92 205 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 LDLRAD4O15165 306 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 ERP29P30040 261 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 PRKXP51817 358 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 ST3GAL2Q16842 350 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 CD276Q5ZPR3 534 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 FAAP20Q6NZ36 180 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 ADGRE4PQ86SQ3 457 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 YRDCQ86U90 279 aaKnown RBP18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 BEST3Q8N1M1 668 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 OR11H7Q8NGC8 314 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 PSMF1Q92530 271 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 PHF21AQ96BD5 680 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 NKIRAS2Q9NYR9 191 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 FLVCR2Q9UPI3 526 aa18.67■□□□□ 0.58
CCDC88B-208ENST00000492980 GPR179Q6PRD1 2367 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 PEX14O75381 377 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 RBBP9O75884 186 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 WDPCPO95876 746 aa18.66■□□□□ 0.58
CCDC88B-208ENST00000492980 GABRA1P14867 456 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms