RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 SLC35D3Q5M8T2 416 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 MBNL2Q5VZF2 373 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 C12orf73Q69YU5 71 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 DCXRQ7Z4W1 244 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 LURAP1LQ8IV03 231 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 ERI1Q8IV48 349 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 PQLC1Q8N2U9 271 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 BBS1Q8NFJ9 593 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 OR6N2Q8NGY6 317 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 IPCEF1Q8WWN9 437 aaPredicted RBP13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 ZMYND19Q96E35 227 aaPredicted RBP13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 MARS2Q96GW9 593 aaKnown RBP13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 TMUB1Q9BVT8 246 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 OR2J1Q9GZK6 312 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 RIBC2Q9H4K1 309 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 MARCH7Q9H992 704 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 SLCO1C1Q9NYB5 712 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 USE1Q9NZ43 259 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 TAAR3PQ9P1P4 343 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 GPR160Q9UJ42 338 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 USF3Q68DE3 2245 aa13.96□□□□□ -0.17
MSH5-SAPCD1-206ENST00000491552 J3QW42 95 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 PRKYO43930 277 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ALPLP05186 524 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 MPV17P39210 176 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 RPS7P62081 194 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 NKPD1Q17RQ9 610 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 KRTAP27-1Q3LI81 207 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TIGD4Q8IY51 512 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ZCCHC24Q8N2G6 241 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 OR10S1Q8NGN2 331 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 KLF14Q8TD94 323 aaPredicted RBP13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 COG8Q96MW5 612 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 C9orf16Q9BUW7 83 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TPK1Q9H3S4 243 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 MS4A5Q9H3V2 200 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 DDX28Q9NUL7 540 aaKnown RBP13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ORC6Q9Y5N6 252 aa13.95□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TRIM64A6NGJ6 449 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TRIM64BA6NI03 449 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 M0R129 80 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 LY6HO94772 140 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 BAG2O95816 211 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 IGHV3-13P01766 116 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ACSM4P0C7M7 580 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 SLC2A5P22732 501 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TUBG1P23258 451 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 POLR2IP36954 125 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ALDH3A2P51648 485 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 RAD23AP54725 363 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 APOFQ13790 326 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 EIF2B1Q14232 305 aaKnown RBP13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 MOGQ16653 247 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 RSPO1Q2MKA7 263 aaPredicted RBP13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ALKBH6Q3KRA9 238 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ARFGEF3Q5TH69 2177 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 CLEC2AQ6UVW9 174 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 DNM1P46Q6ZS02 220 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 SHFQ7M4L6 423 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 CBR4Q8N4T8 237 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ZNF525Q8N782 197 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TCEANCQ8N8B7 351 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 SNX33Q8WV41 574 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 NEU4Q8WWR8 484 aaPredicted RBP13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 APOBEC3DQ96AK3 386 aaPredicted RBP13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 SLAMF6Q96DU3 332 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 POFUT1Q9H488 388 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 DLL4Q9NR61 685 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TUBG2Q9NRH3 451 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 STARD10Q9Y365 291 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ARID1AO14497 2285 aa13.94□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ZNF878C9JN71 531 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ANKRD65E5RJM6 399 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 F5H5K5 113 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 H7C1Q1 480 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TLX2O43763 284 aaPredicted RBP13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 SELENOFO60613 162 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 CSF3P09919 207 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TPTEP56180 551 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 DSCR9P59020 149 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TNK1Q13470 666 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 LCN1P1Q5VSP4 162 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 DPY19L4Q7Z388 723 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 OR5L1Q8NGL2 311 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TMEM163Q8TC26 289 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ST7LQ8TDW4 575 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 SPTSSAQ969W0 71 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 COPS4Q9BT78 406 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 MYOZ1Q9NP98 299 aaPredicted RBP13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 CENPMQ9NSP4 180 aa13.93□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 CCDC182A6NF36 153 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 M0R135 149 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 MT-ND5P03915 603 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 NAT2P11245 290 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 NAA10P41227 235 aaPredicted RBP13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 EFNB1P98172 346 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TAF13Q15543 124 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 TMEM255AQ5JRV8 349 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 COLCA1Q6ZS62 124 aa13.92□□□□□ -0.18
MSH5-SAPCD1-206ENST00000491552 ZNF799Q96GE5 643 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms