RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 ZNF716A6NP11 495 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SUPT3HB4E1H0 165 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 E5RI56 91 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 E7EWF7 191 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SMLR1H3BR10 107 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 LGALS8O00214 317 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SLC28A1O00337 649 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SULT1C2O00338 296 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CCSO14618 274 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PRMT5O14744 637 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PHOX2AO14813 284 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PHYHO14832 338 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ADAM12O43184 909 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PHF1O43189 567 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 DLEU1O43261 78 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RNF13O43567 381 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TCF21O43680 179 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 NUDT21O43809 227 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PRKYO43930 277 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SOX15O60248 233 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FADS1O60427 444 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RAD1O60671 282 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 HPGDSO60760 199 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 EDF1O60869 148 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SDC3O75056 442 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 UGT2B11O75310 529 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 STX11O75558 287 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ADAP1O75689 374 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RAD51DO75771 328 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 UPK1BO75841 260 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 AHSA1O95433 338 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SERPINA3P01011 423 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 IFNA10P01566 189 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 IFNGP01579 166 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SNRPCP09234 159 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 NUDT17P0C025 328 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CTXN2P0C2S0 81 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF735P0CB33 412 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RRASP10301 218 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RNH1P13489 461 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 NQO2P16083 231 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ADRA2CP18825 462 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 KLK2P20151 261 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 EDNRAP25101 427 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PSMB4P28070 264 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 HSD11B1P28845 292 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 GTF2E2P29084 291 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 DDTP30046 118 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SPRP35270 261 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 RFC3P40938 356 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PTGFRP43088 359 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 BRCC3P46736 316 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 QARSP47897 775 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SERPINB10P48595 397 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 KHKP50053 298 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PLK1P53350 603 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CLDN6P56747 220 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 DEFA1P59665 94 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 DEFA3P59666 94 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 AP3S2P59780 193 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MRPS22P82650 360 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MRPS11P82912 194 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TFAMQ00059 246 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 IL5RAQ01344 420 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TNFRSF17Q02223 184 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 YWHAHQ04917 246 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MERTKQ12866 999 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 LCP2Q13094 533 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SCGB2A2Q13296 93 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ORC2Q13416 577 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ILKQ13418 452 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PNOCQ13519 176 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 AQP6Q13520 282 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 KRR1Q13601 381 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TSTA3Q13630 321 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SERTAD2Q14140 314 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FASTKQ14296 549 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CLINT1Q14677 625 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ARL6IP1Q15041 203 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SIX1Q15475 284 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 SPA17Q15506 151 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 OR8G1Q15617 311 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MPPED2Q15777 294 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 MICAQ29983 383 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FAM83EQ2M2I3 478 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 ZNF181Q2M3W8 571 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 VPS26BQ4G0F5 336 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 BCL7AQ4VC05 210 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 C14orf28Q4W4Y0 310 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CLLU1Q5K131 121 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FAM74A1Q5RGS3 127 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 CELF3Q5SZQ8 465 aaKnown RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 PIP5KL1Q5T9C9 394 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 HACD4Q5VWC8 232 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TMEM236Q5W0B7 351 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 LRRC66Q68CR7 880 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 LAMTOR1Q6IAA8 161 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 OR6B2Q6IFH4 312 aa1.7□□□□□ -2.14
HMGB1-208ENST00000490788 FAHD2BQ6P2I3 314 aaPredicted RBP1.7□□□□□ -2.14
HMGB1-208ENST00000490788 TRAT1Q6PIZ9 186 aa1.7□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms