RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SCPEP1Q9HB40 452 aa16.02■□□□□ 0.15
VIM-206ENST00000487938 GDF2Q9UK05 429 aaPredicted RBP16.02■□□□□ 0.15
VIM-206ENST00000487938 TRAV14DV4A0A0A6YYC5 116 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 H3BUI4 141 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 LGALS8O00214 317 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 DAP3P51398 398 aaKnown RBP16.01■□□□□ 0.15
VIM-206ENST00000487938 BIDP55957 195 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 ZP4Q12836 540 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 GK2Q14410 553 aaPredicted RBP16.01■□□□□ 0.15
VIM-206ENST00000487938 C1orf100Q5SVJ3 147 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 TMEM244Q5VVB8 128 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 GVQW1Q8N7I0 195 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 CHST4Q8NCG5 386 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 CADM4Q8NFZ8 388 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 OR52N4Q8NGI2 321 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 C11orf40Q8WZ69 217 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 SLC25A21Q9BQT8 299 aaPredicted RBP16.01■□□□□ 0.15
VIM-206ENST00000487938 FOXQ1Q9C009 403 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 PTGES2Q9H7Z7 377 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 AQP8O94778 261 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 GLB1P16278 677 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 FOXF1Q12946 379 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 SLC22A6Q4U2R8 563 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 ZNF660Q6AZW8 331 aaPredicted RBP16.01■□□□□ 0.15
VIM-206ENST00000487938 C5orf46Q6UWT4 87 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 OR13C8Q8NGS7 320 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 CHST11Q9NPF2 352 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 RHBDD3Q9Y3P4 386 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 CABIN1Q9Y6J0 2220 aa16.01■□□□□ 0.15
VIM-206ENST00000487938 ARPC4-TTLL3A0A0A6YYG9 625 aa16■□□□□ 0.15
VIM-206ENST00000487938 EFNA2O43921 213 aa16■□□□□ 0.15
VIM-206ENST00000487938 MELTFP08582 738 aa16■□□□□ 0.15
VIM-206ENST00000487938 APOBEC1P41238 236 aaKnown RBP16■□□□□ 0.15
VIM-206ENST00000487938 PCK2Q16822 640 aa16■□□□□ 0.15
VIM-206ENST00000487938 TUSC1Q2TAM9 212 aa16■□□□□ 0.15
VIM-206ENST00000487938 CDNFQ49AH0 187 aa16■□□□□ 0.15
VIM-206ENST00000487938 PXDC1Q5TGL8 231 aa16■□□□□ 0.15
VIM-206ENST00000487938 LYPD6Q86Y78 171 aa16■□□□□ 0.15
VIM-206ENST00000487938 ZNF584Q8IVC4 421 aa16■□□□□ 0.15
VIM-206ENST00000487938 PAQR4Q8N4S7 273 aaPredicted RBP16■□□□□ 0.15
VIM-206ENST00000487938 ST8SIA1Q92185 356 aa16■□□□□ 0.15
VIM-206ENST00000487938 SLAMF6Q96DU3 332 aa16■□□□□ 0.15
VIM-206ENST00000487938 LOC390937A0A1W2PQ73 354 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 RFPL4AA6NLU0 287 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 RFPL4AL1F8VTS6 287 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 CCSO14618 274 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 HEXBP07686 556 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 BDKRB2P30411 391 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 DHRS2Q13268 280 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 OR52W1Q6IF63 320 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 PAPD4Q6PIY7 484 aaKnown RBP15.99■□□□□ 0.15
VIM-206ENST00000487938 ZNF813Q6ZN06 617 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 TMPRSS9Q7Z410 1059 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 ANKRD37Q7Z713 158 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 FJX1Q86VR8 437 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 MISPQ8IVT2 679 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 RNF133Q8WVZ7 376 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 DDIT4LQ96D03 193 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 ADAT3Q96EY9 351 aaPredicted RBP15.99■□□□□ 0.15
VIM-206ENST00000487938 SEC22AQ96IW7 307 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 SLCO5A1Q9H2Y9 848 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 FAM206AQ9NX38 181 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 TTRP02766 147 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 CD74P04233 296 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 UBCP0CG48 685 aaKnown RBP15.99■□□□□ 0.15
VIM-206ENST00000487938 BCKDHBP21953 392 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 CXADRP78310 365 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 LIN54Q6MZP7 749 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 PRSS42Q7Z5A4 293 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 TRAPPC6BQ86SZ2 158 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 ZNF546Q86UE3 836 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 RTN4RL2Q86UN3 420 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 BEST3Q8N1M1 668 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 NFAM1Q8NET5 270 aaPredicted RBP15.99■□□□□ 0.15
VIM-206ENST00000487938 OR10H5Q8NGA6 315 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 TMEM185BQ9H7F4 350 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 VSIG4Q9Y279 399 aa15.99■□□□□ 0.15
VIM-206ENST00000487938 RAB27BO00194 218 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 UNC119Q13432 240 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 ZNF260Q3ZCT1 412 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 LRRC37A5PQ49AS3 106 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 C3orf33Q6P1S2 294 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 RNF144BQ7Z419 303 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 NAXDQ8IW45 347 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 CDH26Q8IXH8 852 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 CARFQ8N187 725 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 RELL2Q8NC24 303 aaPredicted RBP15.98■□□□□ 0.15
VIM-206ENST00000487938 NUDCD2Q8WVJ2 157 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 AQP3Q92482 292 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 PBOV1Q9GZY1 135 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 PFDN2Q9UHV9 154 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 RAB22AQ9UL26 194 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 NOP16Q9Y3C1 178 aaKnown RBP15.98■□□□□ 0.15
VIM-206ENST00000487938 CFAP54Q96N23 3096 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 TRBV11-1A0A0K0K1C0 115 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 METTL21EPA6NDL7 271 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 LIPT2A6NK58 231 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 VSTM2BA6NLU5 285 aa15.98■□□□□ 0.15
VIM-206ENST00000487938 SYT7O43581 403 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms