RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 SLC35G3Q8N808 338 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 PLPPR1Q8TBJ4 325 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 HGDQ93099 445 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 DUS3LQ96G46 650 aaKnown RBP1.08□□□□□ -2.24
VPS50-216ENST00000484954 ZNF317Q96PQ6 595 aaPredicted RBP1.08□□□□□ -2.24
VPS50-216ENST00000484954 LRRC40Q9H9A6 602 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 C21orf62Q9NYP8 219 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 ING4Q9UNL4 249 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 NPTNQ9Y639 398 aa1.08□□□□□ -2.24
VPS50-216ENST00000484954 TRAV19A0A0A6YYK7 116 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 FAM240BA0A1B0GVZ2 78 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 OR6C74A6NCV1 312 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 PSTPIP1O43586 416 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 NDUFB10O96000 172 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 UQCRFS1P1P0C7P4 283 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 WARSP23381 471 aaKnown RBP1.07□□□□□ -2.24
VPS50-216ENST00000484954 SYKP43405 635 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 SLC25A11Q02978 314 aaKnown RBP1.07□□□□□ -2.24
VPS50-216ENST00000484954 TNFRSF9Q07011 255 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 FAM222AQ5U5X8 452 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 ADNP2Q6IQ32 1131 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 LIX1Q8N485 282 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 OR10AD1Q8NGE0 317 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 OR1S2Q8NGQ3 325 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 CXorf40AQ8TE69 158 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 GALNT14Q96FL9 552 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 ZFP3Q96NJ6 502 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 HSD17B10Q99714 261 aaKnown RBP1.07□□□□□ -2.24
VPS50-216ENST00000484954 GGTLC1Q9BX51 225 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 RACGAP1Q9H0H5 632 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 ZSCAN16Q9H4T2 348 aaPredicted RBP1.07□□□□□ -2.24
VPS50-216ENST00000484954 EDA2RQ9HAV5 297 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 LSM7Q9UK45 103 aaKnown RBP1.07□□□□□ -2.24
VPS50-216ENST00000484954 CSDC2Q9Y534 153 aaKnown RBP1.07□□□□□ -2.24
VPS50-216ENST00000484954 COL11A1P12107 1806 aaPredicted RBP1.07□□□□□ -2.24
VPS50-216ENST00000484954 SVILO95425 2214 aa1.07□□□□□ -2.24
VPS50-216ENST00000484954 ATAD2BQ9ULI0 1458 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 PRR14LQ5THK1 2151 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 IGHV7-4-1A0A0J9YVY3 117 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 J3QKU1 62 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 MANBAO00462 879 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 RDH16O75452 317 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 CNMDO75829 334 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 KLHL2O95198 593 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 SERPIND1P05546 499 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 SLC2A3P11169 496 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 HRES1P13985 223 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 NCF2P19878 526 aaPredicted RBP1.06□□□□□ -2.24
VPS50-216ENST00000484954 MX1P20591 662 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 F2RP25116 425 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 PBLDP30039 288 aaPredicted RBP1.06□□□□□ -2.24
VPS50-216ENST00000484954 NSG1P42857 185 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 CDKN2DP55273 166 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 CCNA1P78396 465 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 IHHQ14623 411 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 ZMYND11Q15326 602 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 IMMTQ16891 758 aaKnown RBP1.06□□□□□ -2.24
VPS50-216ENST00000484954 PRAMEF5Q5TYX0 476 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 PRAMEF6Q5VXH4 476 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 CCDC73Q6ZRK6 1079 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 FAM228AQ86W67 206 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 PDIK1LQ8N165 341 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 EID2Q8N6I1 236 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 B3GNT7Q8NFL0 401 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 RHEBL1Q8TAI7 183 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 FBXO32Q969P5 355 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 SLC39A3Q9BRY0 314 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 EXOSC4Q9NPD3 245 aaKnown RBP1.06□□□□□ -2.24
VPS50-216ENST00000484954 PSMC3IPQ9P2W1 217 aaPredicted RBP1.06□□□□□ -2.24
VPS50-216ENST00000484954 STARD10Q9Y365 291 aa1.06□□□□□ -2.24
VPS50-216ENST00000484954 IGHV3-72A0A0B4J1Y9 119 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 IGKV1-8A0A0C4DH67 115 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 XKRY2A2RUG3 117 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 PCP4L1A6NKN8 68 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 OR2AG2A6NM03 316 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 K7EMT4 169 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 EEDO75530 441 aaKnown RBP1.05□□□□□ -2.24
VPS50-216ENST00000484954 PALMO75781 387 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 CYB5R3P00387 301 aaPredicted RBP1.05□□□□□ -2.24
VPS50-216ENST00000484954 LHBP01229 141 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 ZNF250P15622 560 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 HCAR3P49019 387 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 PRLHRP49683 370 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 CCNHP51946 323 aaPredicted RBP1.05□□□□□ -2.24
VPS50-216ENST00000484954 VSX2P58304 361 aaPredicted RBP1.05□□□□□ -2.24
VPS50-216ENST00000484954 ACTR3P61158 418 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 YWHAGP61981 247 aaKnown RBP eCLIP1.05□□□□□ -2.24
VPS50-216ENST00000484954 CHRNA6Q15825 494 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 ZNF726P1Q15940 193 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 ANKRD26P1Q6NSI1 321 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 RNASEKQ6P5S7 137 aaKnown RBP1.05□□□□□ -2.24
VPS50-216ENST00000484954 ZYG11AQ6WRX3 759 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 CDH26Q8IXH8 852 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 OR9K2Q8NGE7 335 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 KCNG3Q8TAE7 436 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 RAB3IL1Q8TBN0 382 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 STACQ99469 402 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 RSG1Q9BU20 258 aa1.05□□□□□ -2.24
VPS50-216ENST00000484954 FGF20Q9NP95 211 aaPredicted RBP1.05□□□□□ -2.24
VPS50-216ENST00000484954 ETNK2Q9NVF9 386 aa1.05□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms