RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 GRIP1Q9Y3R0 1128 aa10.29□□□□□ -0.76
VPS13D-204ENST00000469054 SPG11Q96JI7 2443 aa10.29□□□□□ -0.76
VPS13D-204ENST00000469054 AKAP6Q13023 2319 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 TMEM129A0AVI4 362 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 C3orf80F5H4A9 247 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 OVOL3O00110 214 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 MPZL2O60487 215 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 NGFP01138 241 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 BMP4P12644 408 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 HTR1FP30939 366 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 NAA10P41227 235 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-204ENST00000469054 ERVS71-1P61550 626 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 RIPK1Q13546 671 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 SWI5Q1ZZU3 235 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 MEDAGQ5VYS4 303 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 TTC23Q5W5X9 447 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 C11orf71Q6IPW1 123 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 RHOUQ7L0Q8 258 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 SLC16A9Q7RTY1 509 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 OR1J1Q8NGS3 322 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 RHOXF1Q8NHV9 184 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 OTOSQ8NHW6 89 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 RNF133Q8WVZ7 376 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 IPCEF1Q8WWN9 437 aaPredicted RBP10.28□□□□□ -0.76
VPS13D-204ENST00000469054 SLAMF6Q96DU3 332 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 COPS4Q9BT78 406 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 ABHD6Q9BV23 337 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 YIPF3Q9GZM5 350 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 VCXQ9H320 206 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 PLK3Q9H4B4 646 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 CENPMQ9NSP4 180 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 DNAJC27Q9NZQ0 273 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 WARS2Q9UGM6 360 aaKnown RBP10.28□□□□□ -0.76
VPS13D-204ENST00000469054 ABCA12Q86UK0 2595 aa10.28□□□□□ -0.76
VPS13D-204ENST00000469054 ZNF878C9JN71 531 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 GPR37O15354 613 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 LYNP07948 512 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 MRPL3P09001 348 aaKnown RBP10.27□□□□□ -0.77
VPS13D-204ENST00000469054 ACSM4P0C7M7 580 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 ZNF250P15622 560 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 PAX1P15863 534 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 GABRB1P18505 474 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 ALOX5APP20292 161 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 SLC15A1P46059 708 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 EVX1P49640 407 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 RGS6P49758 472 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 NUDT6P53370 316 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 TPTEP56180 551 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 PRSS12P56730 875 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 SELENOVP59797 346 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 PPP1CBP62140 327 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 SNRPD2P62316 118 aaKnown RBP10.27□□□□□ -0.77
VPS13D-204ENST00000469054 TMED1Q13445 227 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 TAF13Q15543 124 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 OCLNQ16625 522 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 RFPL4BQ6ZWI9 263 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 LRP11Q86VZ4 500 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 ENTHD1Q8IYW4 607 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 DHRSXQ8N5I4 330 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 SYNPRQ8TBG9 265 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 SLC25A40Q8TBP6 338 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 THEM6Q8WUY1 208 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 NRG4Q8WWG1 115 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 CYGBQ8WWM9 190 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 RFKQ969G6 155 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 SPTSSAQ969W0 71 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 MARS2Q96GW9 593 aaKnown RBP10.27□□□□□ -0.77
VPS13D-204ENST00000469054 AMELYQ99218 206 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 CNN2Q99439 309 aaKnown RBP10.27□□□□□ -0.77
VPS13D-204ENST00000469054 DOK1Q99704 481 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 KCNJ15Q99712 375 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 FOXC2Q99958 501 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 APOL4Q9BPW4 351 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 CACNG6Q9BXT2 260 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 MRPL37Q9BZE1 423 aaKnown RBP10.27□□□□□ -0.77
VPS13D-204ENST00000469054 OR2J1Q9GZK6 312 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 ADGRL4Q9HBW9 690 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 ZNF701Q9NV72 531 aaPredicted RBP10.27□□□□□ -0.77
VPS13D-204ENST00000469054 AASSQ9UDR5 926 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 DUSP13Q9UII6 198 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 LAMP5Q9UJQ1 280 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS13D-204ENST00000469054 FZR1Q9UM11 496 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 PMF1-BGLAPU3KQ54 211 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 DCHS2Q6V1P9 2916 aa10.27□□□□□ -0.77
VPS13D-204ENST00000469054 CSMD1Q96PZ7 3565 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 IGLV3-9A0A075B6K5 115 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 SNTNA6NMZ2 147 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 J3QW42 95 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 M0R135 149 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 RRP9O43818 475 aaKnown RBP10.26□□□□□ -0.77
VPS13D-204ENST00000469054 ENTPD6O75354 484 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 ATP6V1G2O95670 118 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 SBK2P0C263 348 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 TUBG1P23258 451 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 GCH1P30793 250 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 OTX1P32242 354 aaPredicted RBP10.26□□□□□ -0.77
VPS13D-204ENST00000469054 CDKN1AP38936 164 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 HCCSP53701 268 aa10.26□□□□□ -0.77
VPS13D-204ENST00000469054 GRB2P62993 217 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms