RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 AMELYQ99218 206 aa13.16□□□□□ -0.3
NPHP4-205ENST00000466897 SCN3BQ9NY72 215 aa13.16□□□□□ -0.3
NPHP4-205ENST00000466897 DIMT1Q9UNQ2 313 aaKnown RBP13.16□□□□□ -0.3
NPHP4-205ENST00000466897 PKDREJQ9NTG1 2253 aa13.16□□□□□ -0.3
NPHP4-205ENST00000466897 UTP20O75691 2785 aaKnown RBP13.15□□□□□ -0.3
NPHP4-205ENST00000466897 CADP27708 2225 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 ABCD4O14678 606 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 XPNPEP2O43895 674 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 SULT1C4O75897 302 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 APOL3O95236 402 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 APOC1P02654 83 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 CD3EP07766 207 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 CRHBPP24387 322 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 RGS6P49758 472 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 HCCSP53701 268 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 SLC35A2P78381 396 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 ZNF85Q03923 595 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 RSPO1Q2MKA7 263 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-205ENST00000466897 ZNF684Q5T5D7 378 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 ALKBH2Q6NS38 261 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 ZNF322Q6U7Q0 402 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-205ENST00000466897 UNQ6126/PRO20091Q6UXV3 157 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 SMAP2Q8WU79 429 aaPredicted RBP13.15□□□□□ -0.3
NPHP4-205ENST00000466897 SPTSSAQ969W0 71 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 MRPL48Q96GC5 212 aaKnown RBP13.15□□□□□ -0.3
NPHP4-205ENST00000466897 KCNJ15Q99712 375 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 KCNS3Q9BQ31 491 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 COPS4Q9BT78 406 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 MROQ9BYG7 248 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 YTHDF1Q9BYJ9 559 aaKnown RBP13.15□□□□□ -0.3
NPHP4-205ENST00000466897 CDH20Q9HBT6 801 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 UBAP1Q9NZ09 502 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 BLOC1S6Q9UL45 172 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 TPRKBQ9Y3C4 175 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 RNF115Q9Y4L5 304 aa13.15□□□□□ -0.3
NPHP4-205ENST00000466897 FLNBO75369 2602 aaKnown RBP13.15□□□□□ -0.3
NPHP4-205ENST00000466897 RTTNQ86VV8 2226 aa13.15□□□□□ -0.31
NPHP4-205ENST00000466897 DAPL1A0PJW8 107 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 C5orf49A4QMS7 147 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 TUBG1P23258 451 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 CALCRP30988 508 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 ACTA2P62736 377 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 ACTG2P63267 376 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 GALEQ14376 348 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 CDONQ4KMG0 1287 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 RNLSQ5VYX0 342 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 ADAM5Q6NVV9 412 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 TMEM154Q6P9G4 183 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 ARL9Q6T311 187 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 DRAM2Q6UX65 266 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 COLCA1Q6ZS62 124 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 KCTD20Q7Z5Y7 419 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 KRT77Q7Z794 578 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 RFLNBQ8N5W9 214 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF540Q8NDQ6 660 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 NUP37Q8NFH4 326 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 PIK3IP1Q96FE7 263 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 TMEM80Q96HE8 168 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF649Q9BS31 505 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 DUSP21Q9H596 190 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 TUBG2Q9NRH3 451 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 CENPMQ9NSP4 180 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 TBCCD1Q9NVR7 557 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 MYRFQ9Y2G1 1151 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 LRCH1Q9Y2L9 728 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 EXOSC1Q9Y3B2 195 aaKnown RBP13.14□□□□□ -0.31
NPHP4-205ENST00000466897 LRP12Q9Y561 859 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 PCDHGB5Q9Y5G0 923 aa13.14□□□□□ -0.31
NPHP4-205ENST00000466897 PTPN13Q12923 2485 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 PRR32B1ATL7 298 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 SHISA9B4DS77 424 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 M0R135 149 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 ABHD16AO95870 558 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 H2BFMP0C1H6 154 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 ACSM4P0C7M7 580 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 NR4A1P22736 598 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 HSD11B1P28845 292 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 TPTEP56180 551 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 GABARAPL2P60520 117 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 PSMA6P60900 246 aaKnown RBP13.13□□□□□ -0.31
NPHP4-205ENST00000466897 NKX6-1P78426 367 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-205ENST00000466897 GALK2Q01415 458 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 ST3GAL4Q11206 333 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 TAF13Q15543 124 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 PLEKHG7Q6ZR37 379 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 AHSA2Q719I0 299 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 SSX6Q7RTT6 188 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 SYS1Q8N2H4 156 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF786Q8N393 782 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 PAQR4Q8N4S7 273 aaPredicted RBP13.13□□□□□ -0.31
NPHP4-205ENST00000466897 HAVCR2Q8TDQ0 301 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 MYDGFQ969H8 173 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 ZNF799Q96GE5 643 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 C4orf45Q96LM5 186 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 COG8Q96MW5 612 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 SIGLEC11Q96RL6 698 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 TBX5Q99593 518 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 DOK1Q99704 481 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 RHNO1Q9BSD3 238 aa13.13□□□□□ -0.31
NPHP4-205ENST00000466897 C1QTNF5Q9BXJ0 243 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms