RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TFP02787 698 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 GYPBP06028 91 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 PRR23D2P0DMB1 279 aaPredicted RBP10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 CLUP10909 449 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 SPI1P17947 270 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 CALCRP30988 508 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 POLR2IP36954 125 aaKnown RBP10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 NR4A2P43354 598 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 EFNA4P52798 201 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 PSG4Q00888 419 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 PLP2Q04941 152 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 SCRN3Q0VDG4 424 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 SNAPC1Q16533 368 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 MEP1BQ16820 701 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 MIDNQ504T8 468 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 PABPC1L2AQ5JQF8 200 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 OTPQ5XKR4 325 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 C12orf73Q69YU5 71 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 PLBD1Q6P4A8 553 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 ZBTB49Q6ZSB9 765 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 FAM216AQ8WUB2 273 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNRF4Q8WWF5 429 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 HCAR1Q9BXC0 346 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 OR2H1Q9GZK4 316 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 C1orf198Q9H425 327 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 RIBC2Q9H4K1 309 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 MED20Q9H944 212 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 HINT3Q9NQE9 182 aaKnown RBP10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 CA10Q9NS85 328 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 TVP23BQ9NYZ1 205 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 POLR1DQ9Y2S0 133 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 TIMM10BQ9Y5J6 103 aa10.23□□□□□ -0.77
SQSTM1-206ENST00000466342 VWFP04275 2813 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 IGHV2OR16-5A0A0B4J2B6 119 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 IQCMA0A1B0GVH7 501 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 B9A039 149 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF35P13682 527 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 FMO3P31513 532 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 SERPINF1P36955 418 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 BLVRAP53004 296 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 TEKQ02763 1124 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 TBC1D28Q2M2D7 210 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 CPOQ8IVL8 374 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 CPEB3Q8NE35 698 aaKnown RBP10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 SLC30A7Q8NEW0 376 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 NUP37Q8NFH4 326 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 OR51L1Q8NGJ5 315 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 OR6K6Q8NGW6 343 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 AKR7LQ8NHP1 331 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 PTP4A1Q93096 173 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 OTULINQ96BN8 352 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 SLC29A1Q99808 456 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 WNT5BQ9H1J7 359 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 DCLRE1BQ9H816 532 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 MRPL22Q9NWU5 206 aaKnown RBP10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 ASH2LQ9UBL3 628 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 KCNG2Q9UJ96 466 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 LHFPL6Q9Y693 200 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 COMMD3-BMI1R4GMX3 469 aa10.22□□□□□ -0.77
SQSTM1-206ENST00000466342 PRODHO43272 600 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 SGCEO43556 437 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 PRKYO43930 277 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 DOK2O60496 412 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 GLCEO94923 617 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 COX5BP10606 129 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF823P16415 610 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 STOMP27105 288 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 APEX1P27695 318 aaKnown RBP10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 APLNRP35414 380 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 GGT2P36268 569 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 PDLIM4P50479 330 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 SNRPD2P62316 118 aaKnown RBP10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 TRIP10Q15642 601 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 EFNB3Q15768 340 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 LINC01590Q5TEZ4 76 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 LYPD4Q6UWN0 246 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF771Q7L3S4 317 aaPredicted RBP10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 ALDH16A1Q8IZ83 802 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF511Q8NB15 262 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 OR1J2Q8NGS2 313 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 HRASLS5Q96KN8 279 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 MBOAT4Q96T53 435 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 PIMREGQ9BSJ6 248 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 SOX7Q9BT81 388 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 OR51V1Q9H2C8 321 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 TOR3AQ9H497 397 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 ZNF442Q9H7R0 627 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 CDH20Q9HBT6 801 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 C8orf4Q9NR00 106 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 PLEK2Q9NYT0 353 aa10.21□□□□□ -0.77
SQSTM1-206ENST00000466342 IGHV4-61A0A0C4DH41 118 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 TVP23AA6NH52 213 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 E9PQ18 207 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 H0YHG0 523 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 M0R129 80 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 CASQ2O14958 399 aaPredicted RBP10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 RER1O15258 196 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 LY6HO94772 140 aa10.2□□□□□ -0.78
SQSTM1-206ENST00000466342 SNAP29O95721 258 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms