RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 LSM6P62312 80 aaKnown RBP18.92■□□□□ 0.62
USP4-208ENST00000464168 DEFA6Q01524 100 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 PDLIM3Q53GG5 364 aaPredicted RBP18.92■□□□□ 0.62
USP4-208ENST00000464168 BTNL3Q6UXE8 466 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 OR8G5Q8NG78 346 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 OR13G1Q8NGZ3 307 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 RAB40AQ8WXH6 277 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 ZNF570Q96NI8 536 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 SAR1AQ9NR31 198 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 GID8Q9NWU2 228 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 PTTG3PQ9NZH4 202 aa18.92■□□□□ 0.62
USP4-208ENST00000464168 GMPR2Q9P2T1 348 aaKnown RBP18.92■□□□□ 0.62
USP4-208ENST00000464168 CMYA5Q8N3K9 4069 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 IGHV2-70DA0A0C4DH43 119 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 H0YL77 283 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 J3QW42 95 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 RER1O15258 196 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 SLC16A7O60669 478 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 MDKP21741 143 aaPredicted RBP18.91■□□□□ 0.62
USP4-208ENST00000464168 C16orf87Q6PH81 154 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 GLB1L2Q8IW92 636 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 POU5F2Q8N7G0 328 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 TMIGD2Q96BF3 282 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 RASD2Q96D21 266 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 TMEM246Q9BRR3 403 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 SYT4Q9H2B2 425 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 NMNAT1Q9HAN9 279 aaPredicted RBP18.91■□□□□ 0.62
USP4-208ENST00000464168 MRGBPQ9NV56 204 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 MIOXQ9UGB7 285 aa18.91■□□□□ 0.62
USP4-208ENST00000464168 COA3Q9Y2R0 106 aaPredicted RBP18.91■□□□□ 0.62
USP4-208ENST00000464168 IGHV3-64DA0A0J9YX35 117 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 KIR2DS1A0A191URI9 304 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 IMPA2O14732 288 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 KHDRBS3O75525 346 aaKnown RBP18.9■□□□□ 0.62
USP4-208ENST00000464168 SRP9P49458 86 aaKnown RBP18.9■□□□□ 0.62
USP4-208ENST00000464168 RGS6P49758 472 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 GNB2P62879 340 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 KRR1Q13601 381 aaKnown RBP18.9■□□□□ 0.62
USP4-208ENST00000464168 MAPRE2Q15555 327 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 OR5L1Q8NGL2 311 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 ZNF582Q96NG8 517 aaPredicted RBP18.9■□□□□ 0.62
USP4-208ENST00000464168 RERGLQ9H628 205 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 CMTM6Q9NX76 183 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 ATPIF1Q9UII2 106 aa18.9■□□□□ 0.62
USP4-208ENST00000464168 WNK1Q9H4A3 2382 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 TRAV40A0A0B4J280 105 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 MDFIC2A0A1B0GVS7 189 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 MLNRO43193 412 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 PTP4A3O75365 173 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 FSTL3O95633 263 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 OMGP23515 440 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 PMELP40967 661 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 KCNMB1Q16558 191 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 ZNF181Q2M3W8 571 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 FAM201AQ5SY85 155 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 MOGAT3Q86VF5 341 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 APOBEC3DQ96AK3 386 aaPredicted RBP18.89■□□□□ 0.61
USP4-208ENST00000464168 NEIL1Q96FI4 390 aaPredicted RBP18.89■□□□□ 0.61
USP4-208ENST00000464168 PLEKHA8Q96JA3 519 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 SLC30A2Q9BRI3 323 aa18.89■□□□□ 0.61
USP4-208ENST00000464168 VSX1Q9NZR4 365 aaPredicted RBP18.89■□□□□ 0.61
USP4-208ENST00000464168 F5H5P2 479 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 ZNF682O95780 498 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 SDHAP31040 664 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 ZNF404Q494X3 552 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 IFI44LQ53G44 452 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 SPATC1Q76KD6 591 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 NUAK2Q9H093 628 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 PRDM13Q9H4Q3 707 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 NRIP3Q9NQ35 241 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 SIGLEC7Q9Y286 467 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 MMP24Q9Y5R2 645 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 DOCK11Q5JSL3 2073 aa18.88■□□□□ 0.61
USP4-208ENST00000464168 A0A1B0GWJ7 208 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 IQCF6A8MYZ5 107 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 HOXA3O43365 443 aaPredicted RBP18.87■□□□□ 0.61
USP4-208ENST00000464168 NDUFB2O95178 105 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 HIST1H3AP68431 136 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 SF3A3Q12874 501 aaKnown RBP eCLIP18.87■□□□□ 0.61
USP4-208ENST00000464168 RSPO1Q2MKA7 263 aaPredicted RBP18.87■□□□□ 0.61
USP4-208ENST00000464168 DEFB112Q30KQ8 113 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 HIST2H3PS2Q5TEC6 136 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 GPR139Q6DWJ6 353 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 BRD3OSQ6XYD6 125 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 PTCHD4Q6ZW05 846 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 HIST2H3AQ71DI3 136 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 CBLL1Q75N03 491 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 RRM2BQ7LG56 351 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 TSEN54Q7Z6J9 526 aaKnown RBP18.87■□□□□ 0.61
USP4-208ENST00000464168 SLC15A3Q8IY34 581 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 BHLHE23Q8NDY6 225 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 OR8B3Q8NGG8 313 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 OR10S1Q8NGN2 331 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 SLC7A13Q8TCU3 470 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 FAM46AQ96IP4 442 aaKnown RBP18.87■□□□□ 0.61
USP4-208ENST00000464168 OR8B2Q96RD0 313 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 NUDT16L1Q9BRJ7 211 aaKnown RBP18.87■□□□□ 0.61
USP4-208ENST00000464168 NDEL1Q9GZM8 345 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 TMEM5Q9Y2B1 443 aa18.87■□□□□ 0.61
USP4-208ENST00000464168 LRRC30A6NM36 301 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms