RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RHBDD3Q9Y3P4 386 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 CSAG2Q9Y5P2 127 aa10.68□□□□□ -0.7
MSH6-204ENST00000445503 HMSDA8MTL9 139 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 LMX1BO60663 402 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 MGMTP16455 207 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 MRPS21P82921 87 aaKnown RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 MOGAT2Q3SYC2 334 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 ATPAF1Q5TC12 328 aaPredicted RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 PNLDC1Q8NA58 520 aaKnown RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 RNF128Q8TEB7 428 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 MARC2Q969Z3 335 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 OR5B2Q96R09 309 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 GABRG3Q99928 467 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 NKX6-2Q9C056 277 aaPredicted RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 TXNIPQ9H3M7 391 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 SUSD2Q9UGT4 822 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 HS3ST3A1Q9Y663 406 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 TUBAL3A6NHL2 446 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 HEXBP07686 556 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 ZNF93P35789 620 aaPredicted RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 CLDN6P56747 220 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 OR2W3Q7Z3T1 314 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 SLC22A18ASQ8N1D0 253 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 OR51T1Q8NGJ9 327 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 OR51E1Q8TCB6 317 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 ARL11Q969Q4 196 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 ZNF775Q96BV0 537 aaPredicted RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 ZNF578Q96N58 590 aaPredicted RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 NMNAT2Q9BZQ4 307 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 SERINC1Q9NRX5 453 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 MRPS18BQ9Y676 258 aaKnown RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 HOXD4P09016 255 aaPredicted RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 CHRFAM7AQ494W8 412 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 ZSCAN1Q8NBB4 408 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 WNT2BQ93097 391 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 PGAM5Q96HS1 289 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 WDR77Q9BQA1 342 aaPredicted RBP10.67□□□□□ -0.7
MSH6-204ENST00000445503 GAREM1Q9H706 876 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 FREM3P0C091 2139 aa10.67□□□□□ -0.7
MSH6-204ENST00000445503 MFSD2BA6NFX1 497 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 H0YIG0 161 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ZNF806P0C7X5 589 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 TPT1P13693 172 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 EGR4Q05215 589 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 C11orf87Q6NUJ2 197 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 GLIPR1L1Q6UWM5 242 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ACOT7LQ6ZUV0 252 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ZFP82Q8N141 532 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 OR4K17Q8NGC6 315 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ELP5Q8TE02 316 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ASB5Q8WWX0 329 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 CNTNAP3BQ96NU0 1288 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ZNF768Q9H5H4 540 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 SLC2A4RGQ9NR83 387 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 LRRK1Q38SD2 2015 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 TRBV5-5A0A0J9YX44 114 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 GLI4P10075 376 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 RBMXP38159 391 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 CD96P40200 585 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 DLX2Q07687 328 aaPredicted RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 FUT7Q11130 342 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 SGCBQ16585 318 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.66□□□□□ -0.7
MSH6-204ENST00000445503 LANCL3Q6ZV70 420 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 FAM57BQ71RH2 274 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 LHFPL5Q8TAF8 219 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 RAB3CQ96E17 227 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 S1PR5Q9H228 398 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 RAB22AQ9UL26 194 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 SDK2Q58EX2 2172 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ZNF106Q9H2Y7 1883 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 KIAA1671Q9BY89 1806 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 OR2M5A3KFT3 312 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 NAGAP17050 411 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 NME2P22392 152 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 CAPZBP47756 277 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 CSNK1EP49674 416 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 DAP3P51398 398 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 ATRAIDQ6UW56 229 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 TMEM229BQ8NBD8 167 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 OR52N4Q8NGI2 321 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 OR1S2Q8NGQ3 325 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 TOMM40LQ969M1 308 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 CDC6Q99741 560 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 ADAT1Q9BUB4 502 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 SLC25A32Q9H2D1 315 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 PCDHB10Q9UN67 800 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 MRPS28Q9Y2Q9 187 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 LSM5Q9Y4Y9 91 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 TMEM184BQ9Y519 407 aaPredicted RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 KCNMB2Q9Y691 235 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 R4GMQ9 66 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 A6NIZ1 184 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 M0R036 132 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 OR2A4O95047 310 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 S100A9P06702 114 aaKnown RBP10.66□□□□□ -0.7
MSH6-204ENST00000445503 ASAH2BP0C7U1 165 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 RAP1BP61224 184 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 RAP1AP62834 184 aa10.66□□□□□ -0.7
MSH6-204ENST00000445503 GRINAQ7Z429 371 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms