RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 DUX1O43812 170 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LCATP04180 440 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 FPR2P25090 351 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CSF2RBP32927 897 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 TNFRSF4P43489 277 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 ATP1B3P54709 279 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SLC35A1P78382 337 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CLINT1Q14677 625 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 AGBL4Q5VU57 503 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 RGS7BPQ6MZT1 257 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SLC39A11Q8N1S5 342 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 GDE1Q9NZC3 331 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 KCNIP1Q9NZI2 227 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CGGBP1Q9UFW8 167 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 ATXN7L1Q9ULK2 861 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CD300LBA8K4G0 201 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SLC25A4P12235 298 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CSNK1A1P48729 337 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 MVDP53602 400 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 NTHL1P78549 312 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 RSPO2Q6UXX9 243 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 FOXN4Q96NZ1 517 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CHRDQ9H2X0 955 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 TUBG2Q9NRH3 451 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SLC39A9Q9NUM3 307 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 KCNG2Q9UJ96 466 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 B3GALT5Q9Y2C3 310 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 H3BNC9 293 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 H7C1C5 153 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LANCL1O43813 399 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LIMS1P48059 325 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF136P52737 540 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 RPS18P62269 152 aaKnown RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LCN6P62502 163 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 EEF1A1P5Q5VTE0 462 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF705AQ6ZN79 300 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 TMEM217Q8N7C4 229 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 HSD17B11Q8NBQ5 300 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LPAR4Q99677 370 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 TCRBV21S2A2A0A5A6 115 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 P2RY10O00398 339 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 AADACP22760 399 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 PCBD1P61457 104 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 NHLRC1Q6VVB1 395 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 GRINAQ7Z429 371 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 C17orf47Q8NEP4 570 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 THAP3Q8WTV1 239 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CCDC74AQ96AQ1 378 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SEH1LQ96EE3 360 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 PIGQQ9BRB3 760 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SEMA6CQ9H3T2 930 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SULT2B1O00204 365 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 WNT11O96014 354 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 ZNF770Q6IQ21 691 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 KIRREL1Q96J84 757 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 ALX4Q9H161 411 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 DNMT3BQ9UBC3 853 aaKnown RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 CHRNA9Q9UGM1 479 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 AK3Q9UIJ7 227 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 OR51B4Q9Y5P0 310 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 ZFP92A6NM28 416 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 FIGNL2A6NMB9 653 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SCAF4O95104 1147 aaKnown RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 DHPSP49366 369 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SNU13P55769 128 aaKnown RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 HNRNPKP61978 463 aaKnown RBP eCLIP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 GABREP78334 506 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LAIR2Q6ISS4 152 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 C19orf48Q6RUI8 117 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 DOK3Q7L591 496 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LILRB1Q8NHL6 650 aaPredicted RBP4.35□□□□□ -1.71
CSMD3-203ENST00000343508 OTOSQ8NHW6 89 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 MAP3K3Q99759 626 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 R3HDMLQ9H3Y0 253 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 SMDT1Q9H4I9 107 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 LPAR3Q9UBY5 353 aa4.35□□□□□ -1.71
CSMD3-203ENST00000343508 PLSCR5A0PG75 271 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 SERPINA7P05543 415 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 NMBP08949 121 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 HOXD4P09016 255 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-203ENST00000343508 SNCAP37840 140 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 NKX2-1P43699 371 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-203ENST00000343508 HSD17B7P56937 341 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 EEF1A1P68104 462 aaKnown RBP4.34□□□□□ -1.71
CSMD3-203ENST00000343508 TMEM182Q6ZP80 229 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-203ENST00000343508 LIN37Q96GY3 246 aaPredicted RBP4.34□□□□□ -1.71
CSMD3-203ENST00000343508 NKX2-4Q9H2Z4 354 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 DNAJB11Q9UBS4 358 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 OR5V1Q9UGF6 321 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 SERPINE3A8MV23 424 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 ABCD4O14678 606 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 EIF4E2O60573 245 aaKnown RBP4.34□□□□□ -1.71
CSMD3-203ENST00000343508 PAX6P26367 422 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 SNRPNP63162 240 aaKnown RBP4.34□□□□□ -1.71
CSMD3-203ENST00000343508 MOGAT2Q3SYC2 334 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 PWWP2BQ6NUJ5 590 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 OGFOD3Q6PK18 319 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 GLIPR1L1Q6UWM5 242 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 SPNS2Q8IVW8 549 aa4.34□□□□□ -1.71
CSMD3-203ENST00000343508 MRPL43Q8N983 215 aaKnown RBP4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms