RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 AIPO00170 330 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 MRPL33O75394 65 aaKnown RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 TTRP02766 147 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ISG15P05161 165 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 CD2P06729 351 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ANXA2P07355 339 aaKnown RBP11.8□□□□□ -0.52
HMGB1-202ENST00000339872 ACHEP22303 614 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 OXA1LQ15070 435 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 P2RY14Q15391 338 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 BAK1Q16611 211 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 TMEM244Q5VVB8 128 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 POC5Q8NA72 575 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 GJC3Q8NFK1 279 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 CPT1CQ8TCG5 803 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 N6AMT1Q9Y5N5 214 aa11.8□□□□□ -0.52
HMGB1-202ENST00000339872 KRT33AO76009 404 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 IGHV3-9P01782 118 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 SLC2A1P11166 492 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 TALDO1P37837 337 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 CX3CR1P49238 355 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 GRB2P62993 217 aaKnown RBP11.79□□□□□ -0.52
HMGB1-202ENST00000339872 GALK2Q01415 458 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 CEACAM16Q2WEN9 425 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 METAP1DQ6UB28 335 aaPredicted RBP11.79□□□□□ -0.52
HMGB1-202ENST00000339872 TUSC5Q8IXB3 177 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 ELMOD2Q8IZ81 293 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 GDPD1Q8N9F7 314 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 LGALS14Q8TCE9 139 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 COX4I2Q96KJ9 171 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 MOB1AQ9H8S9 216 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 CALHM2Q9HA72 323 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 TMEM38BQ9NVV0 291 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 CAMK2AQ9UQM7 478 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 SLC5A6Q9Y289 635 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 AKAP13Q12802 2813 aa11.79□□□□□ -0.52
HMGB1-202ENST00000339872 ACSM4P0C7M7 580 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 IL7P13232 177 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 B4GALT1P15291 398 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 NPR2P20594 1047 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 ZNF121P58317 390 aaPredicted RBP11.78□□□□□ -0.52
HMGB1-202ENST00000339872 RIPPLY2Q5TAB7 128 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 FAM27BQ5VT28 67 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 LUZP2Q86TE4 346 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 ZNF283Q8N7M2 679 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 DTX3Q8N9I9 347 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 OR4M1Q8NGD0 313 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 FBXO17Q96EF6 278 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 WDYHV1Q96HA8 205 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 SOSTQ9BQB4 213 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 SLCO5A1Q9H2Y9 848 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 GPR35Q9HC97 309 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 CYSLTR2Q9NS75 346 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 DDX28Q9NUL7 540 aaKnown RBP11.78□□□□□ -0.52
HMGB1-202ENST00000339872 NUFIP1Q9UHK0 495 aaKnown RBP11.78□□□□□ -0.52
HMGB1-202ENST00000339872 CFAP47Q6ZTR5 3102 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 ARPC4-TTLL3A0A0A6YYG9 625 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 A0A1B0GVC2 190 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 A6NIN4 97 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 PSMD7P51665 324 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 CLDN12P56749 244 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 DEFA1P59665 94 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 DEFA3P59666 94 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 TSPO2Q5TGU0 170 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 FOXB1Q99853 325 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 PPP1R3EQ9H7J1 279 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 LIN7BQ9HAP6 207 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 TAS2R4Q9NYW5 299 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 CKLFQ9UBR5 152 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 SPATA2Q9UM82 520 aa11.78□□□□□ -0.52
HMGB1-202ENST00000339872 LMX1BO60663 402 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 CPN1P15169 458 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 ASPHD2Q6ICH7 369 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 MCEMP1Q8IX19 187 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 MINDY2Q8NBR6 621 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 OR8B12Q8NGG6 310 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 SNIP1Q8TAD8 396 aaKnown RBP11.77□□□□□ -0.52
HMGB1-202ENST00000339872 KCNJ15Q99712 375 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 SCNM1Q9BWG6 230 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 PARPBPQ9NWS1 579 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 PLEK2Q9NYT0 353 aa11.77□□□□□ -0.52
HMGB1-202ENST00000339872 A0A0G2JMP0 313 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 A0A0X1KG70 313 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 A0A1W2PQ09 198 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 SYT7O43581 403 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 APOA1P02647 267 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 CSF3P09919 207 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 PTBP1P26599 531 aaKnown RBP eCLIP11.77□□□□□ -0.53
HMGB1-202ENST00000339872 HIST1H3AP68431 136 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 RNPS1Q15287 305 aaKnown RBP11.77□□□□□ -0.53
HMGB1-202ENST00000339872 CCDC92Q53HC0 331 aaPredicted RBP11.77□□□□□ -0.53
HMGB1-202ENST00000339872 ELFN2Q5R3F8 820 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 HIST2H3PS2Q5TEC6 136 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 HIST2H3AQ71DI3 136 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 COMMD2Q86X83 199 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 Q8N402 240 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 ZADH2Q8N4Q0 377 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 OR4M2Q8NGB6 313 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 OR51E1Q8TCB6 317 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 BCO1Q9HAY6 547 aa11.77□□□□□ -0.53
HMGB1-202ENST00000339872 ZNF724A8MTY0 619 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms