RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 GCNT2Q8N0V5 402 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 C1orf162Q8NEQ5 155 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 OR5AK2Q8NH90 309 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 HTRA1Q92743 480 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 KCNJ15Q99712 375 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ATF6BQ99941 703 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 PDCD1LG2Q9BQ51 273 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 SFXN3Q9BWM7 321 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 HDHD5Q9BXW7 423 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 COMMD4Q9H0A8 199 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 CENPMQ9NSP4 180 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ASF1BQ9NVP2 202 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF224Q9NZL3 707 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 FBXL3Q9UKT7 428 aa13.07□□□□□ -0.32
CCDC88C-202ENST00000334448 ITPR1Q14643 2758 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 TMEM269A0A1B0GVZ9 245 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 LOC110117498-PIK3R3F6TDL0 507 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 SGCEO43556 437 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 SYNGR3O43761 229 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 UBCP0CG48 685 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 COX5BP10606 129 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF32P17041 273 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 TGFBR1P36897 503 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 MTNR1BP49286 362 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 RBPJQ06330 500 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 SLC36A2Q495M3 483 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 ACSM3Q53FZ2 586 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 PRR30Q53SZ7 412 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 ZMAT1Q5H9K5 638 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 KLHL24Q6TFL4 600 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 GFRALQ6UXV0 394 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF704Q6ZNC4 412 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 SPATC1Q76KD6 591 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 PRSS45Q7RTY3 260 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 DOLPP1Q86YN1 238 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 CCDC36Q8IYA8 594 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 ELMOD2Q8IZ81 293 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 OR1K1Q8NGR3 316 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 BCL2L2Q92843 193 aaPredicted RBP13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 SH3GL3Q99963 347 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 DCUN1D5Q9BTE7 237 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 OR2H1Q9GZK4 316 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 SLIRPQ9GZT3 109 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 NXF2Q9GZY0 626 aaKnown RBP13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 RNF167Q9H6Y7 350 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 C12orf49Q9H741 205 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 OR52A1Q9UKL2 312 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 ACACBO00763 2458 aa13.06□□□□□ -0.32
CCDC88C-202ENST00000334448 TRBV5-7A0A0A0MS05 114 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 TRAV1-2A0A0B4J238 106 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 SLC19A2O60779 497 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 ARL6IP5O75915 188 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 IL2RAP01589 272 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 RAF1P04049 648 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 TMIGD3P0DMS9 266 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 ACHEP22303 614 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 MAPK3P27361 379 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 SERPINB10P48595 397 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 FOXG1P55316 489 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 TGFBR3Q03167 851 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 FOXF2Q12947 444 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 LSAMPQ13449 338 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 DGUOKQ16854 277 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 RSPO1Q2MKA7 263 aaPredicted RBP13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 Q499Y3 187 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 C1QTNF12Q5T7M4 302 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 GABRG1Q8N1C3 465 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 UBE2J2Q8N2K1 259 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 LRRC18Q8N456 261 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 OR1F12Q8NHA8 337 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 GPR148Q8TDV2 347 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 STARD4Q96DR4 205 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 WNT5BQ9H1J7 359 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 SLC17A5Q9NRA2 495 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 GALNT8Q9NY28 637 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 PLEK2Q9NYT0 353 aa13.05□□□□□ -0.32
CCDC88C-202ENST00000334448 TTLL8A6PVC2 850 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF879B4DU55 563 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 IGLV3-1P01715 115 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 GLI4P10075 376 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 CCL1P22362 96 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 HSD11B1P28845 292 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 ARR3P36575 388 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 PSG4Q00888 419 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 INSL4Q14641 139 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 P2RY6Q15077 328 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 TAF13Q15543 124 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 BCL2L15Q5TBC7 163 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 TMEM244Q5VVB8 128 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 VWA1Q6PCB0 445 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 PCSK4Q6UW60 755 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 DRAM2Q6UX65 266 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 Q6ZSR3 168 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 CEACAM19Q7Z692 300 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 BTLAQ7Z6A9 289 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 TPRA1Q86W33 373 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 C17orf78Q8N4C9 275 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 ZNF676Q8N7Q3 588 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 CNEP1R1Q8N9A8 125 aa13.04□□□□□ -0.32
CCDC88C-202ENST00000334448 ST6GALNAC3Q8NDV1 305 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms