RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 RAC2P15153 192 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 CTRB1P17538 263 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 CTRB2Q6GPI1 263 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 ARRDC1Q8N5I2 433 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 CLEC1AQ8NC01 280 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 SEH1LQ96EE3 360 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 C1QTNF6Q9BXI9 259 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 TMPRSS13Q9BYE2 586 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 MBD1Q9UIS9 605 aaPredicted RBP17.52■□□□□ 0.39
USP48-201ENST00000308271 URGCP-MRPS24S4R325 110 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 H2AFB1P0C5Y9 115 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 DOK3Q7L591 496 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 FAM181AQ8N9Y4 354 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 BAHD1Q8TBE0 780 aaPredicted RBP17.52■□□□□ 0.39
USP48-201ENST00000308271 BTF3L4Q96K17 158 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 LAT2Q9GZY6 243 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 ING1Q9UK53 422 aaPredicted RBP17.52■□□□□ 0.39
USP48-201ENST00000308271 PCDHGA1Q9Y5H4 931 aa17.52■□□□□ 0.39
USP48-201ENST00000308271 BHLHE40O14503 412 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 RPS2P15880 293 aaKnown RBP17.51■□□□□ 0.39
USP48-201ENST00000308271 LIMS1P48059 325 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 CD200R1LQ6Q8B3 271 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 MKXQ8IYA7 352 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 GPA33Q99795 319 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 MIA3Q5JRA6 1907 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 E5RGE8 158 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 FTCDNL1E5RQL4 147 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 TNFRSF4P43489 277 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 C1orf87Q8N0U7 546 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 ZNF784Q8NCA9 323 aaPredicted RBP17.51■□□□□ 0.39
USP48-201ENST00000308271 OR1S2Q8NGQ3 325 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 ZNF681Q96N22 645 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 TEX101Q9BY14 249 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 ENKD1Q9H0I2 346 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 ZCCHC4Q9H5U6 513 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 NSG2Q9Y328 171 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 LAP3P28838 519 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 GRB2P62993 217 aaKnown RBP17.51■□□□□ 0.39
USP48-201ENST00000308271 PLCXD3Q63HM9 321 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 RPUSD3Q6P087 351 aaKnown RBP17.51■□□□□ 0.39
USP48-201ENST00000308271 SHISA6Q6ZSJ9 500 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 COMMD1Q8N668 190 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 C16orf52Q8NHV5 167 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 OTOSQ8NHW6 89 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 BADQ92934 168 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 TXNIPQ9H3M7 391 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 PADI1Q9ULC6 663 aa17.51■□□□□ 0.39
USP48-201ENST00000308271 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.5■□□□□ 0.39
USP48-201ENST00000308271 H7C1Q1 480 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 NKX2-2O95096 273 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 GNB3P16520 340 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 DUSP1P28562 367 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 TMEM65Q6PI78 240 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 MRPL21Q7Z2W9 205 aaKnown RBP17.5■□□□□ 0.39
USP48-201ENST00000308271 OR4D10Q8NGI6 311 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 SGK3Q96BR1 496 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 TGIF2Q9GZN2 237 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 B9D1Q9UPM9 204 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 PI3P19957 117 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 PPICP45877 212 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 OR5M8Q8NGP6 311 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 SFT2D1Q8WV19 159 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 SLAMF6Q96DU3 332 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 C4orf45Q96LM5 186 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 C19orf12Q9NSK7 152 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 TMEM218A2RU14 115 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 LILRB5O75023 590 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 DFFBO76075 338 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 WNT11O96014 354 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 SFTA3P0C7M3 94 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 CTHP32929 405 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 FASLGP48023 281 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 CST9Q5W186 159 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 PTP4A1Q93096 173 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 OR6C68A6NDL8 312 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 OR5K3A6NET4 321 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 TGOLN2O43493 480 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 TAS2R30P59541 319 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 GPR85P60893 370 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 HBG1P69891 147 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 HBG2P69892 147 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 ZNF239Q16600 458 aaKnown RBP17.5■□□□□ 0.39
USP48-201ENST00000308271 OR4S1Q8NGB4 309 aa17.5■□□□□ 0.39
USP48-201ENST00000308271 ZNF749O43361 778 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 LSM11P83369 360 aaKnown RBP eCLIP17.49■□□□□ 0.396e-12■■■■■ 77.1
USP48-201ENST00000308271 BATFQ16520 125 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 PHLDA2Q53GA4 152 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 MOB3CQ70IA8 216 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 SECTM1Q8WVN6 248 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 RP1L1Q8IWN7 2480 aaPredicted RBP17.49■□□□□ 0.39
USP48-201ENST00000308271 A8MXE2 369 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 ZFAND5O76080 213 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 MT-ND4LP03901 98 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 HPNP05981 417 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 FABP1P07148 127 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 TMEM176BQ3YBM2 270 aaPredicted RBP17.49■□□□□ 0.39
USP48-201ENST00000308271 ABHD6Q9BV23 337 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 NUDT9Q9BW91 350 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 SBF2Q86WG5 1849 aa17.49■□□□□ 0.39
USP48-201ENST00000308271 TRAV20A0A0B4J274 112 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms