RNA–Protein interactions for RNA: ENST00000305481.10

USP47-201, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 3,577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-201ENST00000305481 RAB40AQ8WXH6 277 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 ZNF775Q96BV0 537 aaPredicted RBP5.79□□□□□ -1.48
USP47-201ENST00000305481 ADGRG7Q96K78 797 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 HES7Q9BYE0 225 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 LRFN1Q9P244 771 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 KLK11Q9UBX7 282 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 NUFIP1Q9UHK0 495 aaKnown RBP5.79□□□□□ -1.48
USP47-201ENST00000305481 POU2F3Q9UKI9 436 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 RHBDD3Q9Y3P4 386 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 KIAA1549Q9HCM3 1950 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 NCOA6Q14686 2063 aaPredicted RBP5.79□□□□□ -1.48
USP47-201ENST00000305481 MED13Q9UHV7 2174 aa5.79□□□□□ -1.48
USP47-201ENST00000305481 A0A1B0GTI1 187 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 SLC17A2O00624 439 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 B3GALNT1O75752 331 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 VAMP5O95183 116 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 SDHBP21912 280 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GDNFP39905 211 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 RAB25P57735 213 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 RAC3P60763 192 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GABREP78334 506 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 C2orf76Q3KRA6 126 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 TMEM69Q5SWH9 247 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 C10orf128Q5T292 105 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ATAD3CQ5T2N8 411 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ZNF704Q6ZNC4 412 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 FOXL2NBQ6ZUU3 175 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 RHOUQ7L0Q8 258 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 TOMM5Q8N4H5 51 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 SLC7A6Q92536 515 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 THRSPQ92748 146 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 NKD1Q969G9 470 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 NABP1Q96AH0 204 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 SOX7Q9BT81 388 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ZNF416Q9BWM5 594 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 PLEKHA1Q9HB21 404 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ZNF275Q9NSD4 429 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 CGGBP1Q9UFW8 167 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 RBMX2Q9Y388 322 aaKnown RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 C5orf63A6NC05 138 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ZNF878C9JN71 531 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 NPIPA2E9PIF3 369 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 E9PLN8 166 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 NPIPA3F8WFD2 350 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GABARAPH6UMI1 98 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 TRAPPC6AO75865 159 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 UBCP0CG48 685 aaKnown RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 SLC2A1P11166 492 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 HLA-DMAP28067 261 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 RFC3P40938 356 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 CSNK1A1P48729 337 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 POU3F4P49335 361 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GFRA1P56159 465 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 SCAND1P57086 179 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 CARD18P57730 90 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 TAS2R20P59543 309 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ENDOGQ14249 297 aaKnown RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 TBRG1Q3YBR2 411 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 TMEM255AQ5JRV8 349 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 FAM209AQ5JX71 171 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GLYATL3Q5SZD4 288 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 TMEM244Q5VVB8 128 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 JMJD6Q6NYC1 403 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 DNM1P46Q6ZS02 220 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 OR2AJ1Q8NGZ0 328 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 UBASH3BQ8TF42 649 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 KCNE4Q8WWG9 221 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 CREB3L1Q96BA8 519 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 FAM3DQ96BQ1 224 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 FGGYQ96C11 551 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ADAT3Q96EY9 351 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 NAA11Q9BSU3 229 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 ZFP64Q9NPA5 681 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 MRPL15Q9P015 296 aaKnown RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 MRPS18CQ9Y3D5 142 aaKnown RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 CIB4A0PJX0 185 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GJE1A6NN92 205 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ZNF716A6NP11 495 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 TLX3O43711 291 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 CTAG2O75638 210 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 MT-ND4P03905 459 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 CD2P06729 351 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 CELA3AP09093 270 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GIFP27352 417 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GDF1P27539 372 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 MNDAP41218 407 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 CCR6P51684 374 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 PRKXP51817 358 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 PSMA6P60900 246 aaKnown RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 SPOCK1Q08629 439 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 KCNJ8Q15842 424 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 RAB11BQ15907 218 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 SGCAQ16586 387 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 RSPO1Q2MKA7 263 aaPredicted RBP5.78□□□□□ -1.48
USP47-201ENST00000305481 ANKRD16Q6P6B7 361 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 GLRX5Q86SX6 157 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 OR1J2Q8NGS2 313 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 OR6N1Q8NGY5 312 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 ROBO4Q8WZ75 1007 aa5.78□□□□□ -1.48
USP47-201ENST00000305481 OR2B2Q9GZK3 357 aa5.78□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms