RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CLEC18CQ8NCF0 446 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 OR52E1Q8NGJ3 308 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 OLIG1Q8TAK6 271 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC25A43Q8WUT9 341 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 TMEM56Q96MV1 263 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 GPX7Q96SL4 187 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 ACPTQ9BZG2 426 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 NAT8BQ9UHF3 227 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 GDF2Q9UK05 429 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 CCDC187A0A096LP49 1063 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 ZNF840PA6NDX5 716 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SERINC4A6NH21 518 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 M0R3E3 92 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SDC1P18827 310 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 GLRA1P23415 457 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 RPS25P62851 125 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 LRP11Q86VZ4 500 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 TMIGD2Q96BF3 282 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 GAL3ST2Q9H3Q3 398 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SEBOXQ9HB31 216 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 BCL9LQ86UU0 1499 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 KLF7O75840 302 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 NEIL1Q96FI4 390 aaPredicted RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 ATP23Q9Y6H3 246 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 UTS2O95399 124 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 CD37P11049 281 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC39A11Q8N1S5 342 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 DCBLD2Q96PD2 775 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 TXLNGYQ9BZA5 131 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SALL3Q9BXA9 1300 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 PRRG2O14669 202 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 FPR3P25089 353 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 SULT1A1P50225 295 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 TCEAL1Q15170 157 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 FCN2Q15485 313 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 Q6ZN92 141 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 CALHM3Q86XJ0 350 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 OR51F2Q8NH61 342 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 MED20Q9H944 212 aa12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 MRPS16Q9Y3D3 137 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-201ENST00000263630 DNPH1O43598 174 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 EMC4Q5J8M3 183 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 LSMEM1Q8N8F7 131 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 ADGRG7Q96K78 797 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 DICER1Q9UPY3 1922 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 SEMA7AO75326 666 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 SLC35E4Q6ICL7 350 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 DCXRQ7Z4W1 244 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 ADAT1Q9BUB4 502 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 G3V3Y1 287 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 AQP8O94778 261 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 CTSAP10619 480 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 BMP1P13497 986 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 CYB561P49447 251 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 GABRG1Q8N1C3 465 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 RXFP4Q8TDU9 374 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 MRPL37Q9BZE1 423 aaKnown RBP12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 FAM117AQ9C073 453 aa12.77□□□□□ -0.36
CCDC88A-201ENST00000263630 ARNTLO00327 626 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 SOD1P00441 154 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC10A2Q12908 348 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 RBPMS2Q6ZRY4 209 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 OR52I1Q8NGK6 324 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 DYRK2Q92630 601 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 IGSF5Q9NSI5 407 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 GLTPD2A6NH11 291 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 GJB5O95377 273 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 COX6CP09669 75 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 LIMS3P0CW19 117 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 LIMS4P0CW20 117 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 SDHBP21912 280 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 PGGT1BP53609 377 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 SSBP1Q04837 148 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 PMS2P11Q13670 270 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 SMIM21Q3B7S5 101 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 CORO6Q6QEF8 472 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 TBPL2Q6SJ96 375 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF66Q6ZN08 573 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 ZNF2Q9BSG1 426 aaPredicted RBP12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 THYN1Q9P016 225 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 NAGKQ9UJ70 344 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 ALOX5APP20292 161 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 OSTM1Q86WC4 334 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 CLRN3Q8NCR9 226 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 SLC25A46Q96AG3 418 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 MRAP2Q96G30 205 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 TRBV4-1A0A0J9YWV2 114 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 GASTP01350 101 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 GYPAP02724 150 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 EXTL1Q92935 676 aa12.77□□□□□ -0.37
CCDC88A-201ENST00000263630 HEATR5BQ9P2D3 2071 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 PLIN4Q96Q06 1357 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 CTDSP2O14595 271 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 NUDT3O95989 172 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 CD14P08571 375 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 CLEC12BQ2HXU8 276 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 CTU2Q2VPK5 515 aaKnown RBP12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 FAM71CQ8NEG0 241 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 C12orf49Q9H741 205 aa12.76□□□□□ -0.37
CCDC88A-201ENST00000263630 GDE1Q9NZC3 331 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms