RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FPR2P25090 351 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 AQP6Q13520 282 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 ZBED5Q49AG3 693 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 TMEM155Q4W5P6 130 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 FAM122BQ7Z309 247 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 VTCN1Q7Z7D3 282 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 SLC15A3Q8IY34 581 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 BPIFB2Q8N4F0 458 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 ZNF283Q8N7M2 679 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 OR13C2Q8NGS9 318 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 POP5Q969H6 163 aaKnown RBP15.58■□□□□ 0.08
CLN3-241ENST00000635861 RCN3Q96D15 328 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 CMTM5Q96DZ9 223 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 ZNF570Q96NI8 536 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 MSL2Q9HCI7 577 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 ARL8BQ9NVJ2 186 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 RHCGQ9UBD6 479 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 IL19Q9UHD0 177 aa15.58■□□□□ 0.08
CLN3-241ENST00000635861 PURGQ9UJV8 347 aaKnown RBP15.58■□□□□ 0.08
CLN3-241ENST00000635861 PRSS37A4D1T9 235 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 J3KTA2 159 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 IFNL4K9M1U5 179 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 CXCR6O00574 342 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 ZNF682O95780 498 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 IGHV2-70P01814 119 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 ADRA2CP18825 462 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 CPT2P23786 658 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 YAP1P46937 504 aaKnown RBP15.57■□□□□ 0.08
CLN3-241ENST00000635861 HTR5AP47898 357 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 LSM6P62312 80 aaKnown RBP15.57■□□□□ 0.08
CLN3-241ENST00000635861 LIPEQ05469 1076 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 GPR139Q6DWJ6 353 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 KLHL36Q8N4N3 616 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 DCLRE1CQ96SD1 692 aaKnown RBP15.57■□□□□ 0.08
CLN3-241ENST00000635861 TMEM106BQ9NUM4 274 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 SNX13Q9Y5W8 968 aa15.57■□□□□ 0.08
CLN3-241ENST00000635861 GSTA4O15217 222 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 T-ENOLP0DO92 83 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 SDHAP31040 664 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 RGS6P49758 472 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 MESTQ5EB52 335 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 FKBP9P1Q75LS8 142 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 VASH1Q7L8A9 365 aaPredicted RBP15.56■□□□□ 0.08
CLN3-241ENST00000635861 POU5F2Q8N7G0 328 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 C3orf56Q8N813 242 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 PTP4A1Q93096 173 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 GPX7Q96SL4 187 aaPredicted RBP15.56■□□□□ 0.08
CLN3-241ENST00000635861 MMADHCQ9H3L0 296 aaPredicted RBP15.56■□□□□ 0.08
CLN3-241ENST00000635861 NMNAT1Q9HAN9 279 aaPredicted RBP15.56■□□□□ 0.08
CLN3-241ENST00000635861 UBAP1Q9NZ09 502 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 OPN4Q9UHM6 478 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 TAGLN3Q9UI15 199 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 ADAM18Q9Y3Q7 739 aa15.56■□□□□ 0.08
CLN3-241ENST00000635861 A8MXK9 166 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 H7C1C5 153 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 CDC42EP2O14613 210 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 NDUFB2O95178 105 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 SCG5P05408 212 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 LCN6P62502 163 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 LCN2P80188 198 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 PGM2L1Q6PCE3 622 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 HACD2Q6Y1H2 254 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 ADCK1Q86TW2 530 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 SGMS2Q8NHU3 365 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 HAVCR1Q96D42 359 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 HSH2DQ96JZ2 352 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 Q96M85 177 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 PLA2G12AQ9BZM1 189 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 PATZ1Q9HBE1 687 aaKnown RBP15.55■□□□□ 0.08
CLN3-241ENST00000635861 EMC7Q9NPA0 242 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 KRCC1Q9NPI7 259 aaPredicted RBP15.55■□□□□ 0.08
CLN3-241ENST00000635861 NRIP3Q9NQ35 241 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 PLEK2Q9NYT0 353 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 ENPP4Q9Y6X5 453 aa15.55■□□□□ 0.08
CLN3-241ENST00000635861 PKD1L1Q8TDX9 2849 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 A0A1W2PRQ8 180 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 KHDRBS3O75525 346 aaKnown RBP15.54■□□□□ 0.08
CLN3-241ENST00000635861 RAC2P15153 192 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 FUT4P22083 530 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 GPR4P46093 362 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 BTG1P62324 171 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 KRR1Q13601 381 aaKnown RBP15.54■□□□□ 0.08
CLN3-241ENST00000635861 DGCR6Q14129 220 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 SLC27A4Q6P1M0 643 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 C8orf82Q6P1X6 216 aaPredicted RBP15.54■□□□□ 0.08
CLN3-241ENST00000635861 LRRC28Q86X40 367 aaPredicted RBP15.54■□□□□ 0.08
CLN3-241ENST00000635861 GLB1L2Q8IW92 636 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 MUC20Q8N307 709 aaPredicted RBP15.54■□□□□ 0.08
CLN3-241ENST00000635861 OR5L1Q8NGL2 311 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 NSL1Q96IY1 281 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 SLC6A7Q99884 636 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 ZMAT3Q9HA38 289 aaKnown RBP15.54■□□□□ 0.08
CLN3-241ENST00000635861 EFCAB1Q9HAE3 211 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 VSX1Q9NZR4 365 aaPredicted RBP15.54■□□□□ 0.08
CLN3-241ENST00000635861 RPS6KA6Q9UK32 745 aa15.54■□□□□ 0.08
CLN3-241ENST00000635861 MGAM2Q2M2H8 2515 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 OR6C6A6NF89 314 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 NME4O00746 187 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 PTP4A3O75365 173 aa15.53■□□□□ 0.08
CLN3-241ENST00000635861 RGS9O75916 674 aaPredicted RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms