RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ARPC4-TTLL3A0A0A6YYG9 625 aa11□□□□□ -0.65
PNKP-217ENST00000625216 IGLV1-36A0A0B4J1U3 117 aa11□□□□□ -0.65
PNKP-217ENST00000625216 IGKV1D-43A0A0B4J1Z2 117 aa11□□□□□ -0.65
PNKP-217ENST00000625216 SLC35F4A4IF30 521 aa11□□□□□ -0.65
PNKP-217ENST00000625216 SNTNA6NMZ2 147 aa11□□□□□ -0.65
PNKP-217ENST00000625216 M0R3G1 203 aa11□□□□□ -0.65
PNKP-217ENST00000625216 GLCEO94923 617 aa11□□□□□ -0.65
PNKP-217ENST00000625216 RAB36O95755 333 aa11□□□□□ -0.65
PNKP-217ENST00000625216 TFP02787 698 aa11□□□□□ -0.65
PNKP-217ENST00000625216 MRPL3P09001 348 aaKnown RBP11□□□□□ -0.65
PNKP-217ENST00000625216 PGA4P0DJD7 388 aa11□□□□□ -0.65
PNKP-217ENST00000625216 PGA3P0DJD8 388 aa11□□□□□ -0.65
PNKP-217ENST00000625216 BMP4P12644 408 aa11□□□□□ -0.65
PNKP-217ENST00000625216 CTLA4P16410 223 aa11□□□□□ -0.65
PNKP-217ENST00000625216 FABP6P51161 128 aa11□□□□□ -0.65
PNKP-217ENST00000625216 UBE2NP61088 152 aaKnown RBP11□□□□□ -0.65
PNKP-217ENST00000625216 FMODQ06828 376 aa11□□□□□ -0.65
PNKP-217ENST00000625216 RAB40BQ12829 278 aa11□□□□□ -0.65
PNKP-217ENST00000625216 TMED1Q13445 227 aa11□□□□□ -0.65
PNKP-217ENST00000625216 DOC2BQ14184 412 aa11□□□□□ -0.65
PNKP-217ENST00000625216 GGTLC2Q14390 218 aa11□□□□□ -0.65
PNKP-217ENST00000625216 TBCEQ15813 527 aaPredicted RBP11□□□□□ -0.65
PNKP-217ENST00000625216 NEDD8Q15843 81 aa11□□□□□ -0.65
PNKP-217ENST00000625216 CLEC12BQ2HXU8 276 aa11□□□□□ -0.65
PNKP-217ENST00000625216 C3orf36Q3SXR2 165 aa11□□□□□ -0.65
PNKP-217ENST00000625216 TBRG1Q3YBR2 411 aa11□□□□□ -0.65
PNKP-217ENST00000625216 SLC35D3Q5M8T2 416 aa11□□□□□ -0.65
PNKP-217ENST00000625216 LCN1P1Q5VSP4 162 aa11□□□□□ -0.65
PNKP-217ENST00000625216 CCDC36Q8IYA8 594 aa11□□□□□ -0.65
PNKP-217ENST00000625216 OR6V1Q8N148 313 aa11□□□□□ -0.65
PNKP-217ENST00000625216 OR6X1Q8NH79 312 aa11□□□□□ -0.65
PNKP-217ENST00000625216 BCL2L2Q92843 193 aaPredicted RBP11□□□□□ -0.65
PNKP-217ENST00000625216 NMD3Q96D46 503 aaKnown RBP11□□□□□ -0.65
PNKP-217ENST00000625216 TMEM80Q96HE8 168 aa11□□□□□ -0.65
PNKP-217ENST00000625216 ADAD1Q96M93 576 aaKnown RBP11□□□□□ -0.65
PNKP-217ENST00000625216 MRPL13Q9BYD1 178 aaKnown RBP11□□□□□ -0.65
PNKP-217ENST00000625216 NUAK2Q9H093 628 aa11□□□□□ -0.65
PNKP-217ENST00000625216 ADGRL4Q9HBW9 690 aa11□□□□□ -0.65
PNKP-217ENST00000625216 DIMT1Q9UNQ2 313 aaKnown RBP11□□□□□ -0.65
PNKP-217ENST00000625216 PCDHGB1Q9Y5G3 927 aa11□□□□□ -0.65
PNKP-217ENST00000625216 FKBP7Q9Y680 259 aa11□□□□□ -0.65
PNKP-217ENST00000625216 J3QRE1 110 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 UPK3AO75631 287 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 LY6G6DO95868 133 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 GPANK1O95872 356 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 PTHP01270 115 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 IGHA1P01876 353 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 LCKP06239 509 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 JUNBP17275 347 aaPredicted RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 HOXB4P17483 251 aaPredicted RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 APOBEC3AP31941 199 aaPredicted RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 CDKN1AP38936 164 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 ROR2Q01974 943 aaKnown RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 EMX1Q04741 257 aaPredicted RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 LGALS3BPQ08380 585 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 TNK1Q13470 666 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 CAMK2DQ13557 499 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 HIKESHIQ53FT3 197 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 KLHL22Q53GT1 634 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 CARD17Q5XLA6 110 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 ZBTB46Q86UZ6 589 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 TMEM123Q8N131 208 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 MUC15Q8N387 334 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 GPR137CQ8N3F9 429 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 SVOPQ8N4V2 548 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 SYT14Q8NB59 555 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 PROKR2Q8NFJ6 384 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 OR6K6Q8NGW6 343 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 OR2T4Q8NH00 348 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 MUL1Q969V5 352 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 ALKBH3Q96Q83 286 aaPredicted RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 OR2M2Q96R28 347 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 ALG12Q9BV10 488 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 CDCA4Q9BXL8 241 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 RACGAP1Q9H0H5 632 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 SRA1Q9HD15 236 aaKnown RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 ACOT13Q9NPJ3 140 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 HAO2Q9NYQ3 351 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 CRNNQ9UBG3 495 aaPredicted RBP10.99□□□□□ -0.65
PNKP-217ENST00000625216 B9D1Q9UPM9 204 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 ATP23Q9Y6H3 246 aa10.99□□□□□ -0.65
PNKP-217ENST00000625216 IRGMA1A4Y4 181 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 TVP23AA6NH52 213 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 SMAD7O15105 426 aaKnown RBP10.98□□□□□ -0.65
PNKP-217ENST00000625216 SELENOFO60613 162 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 SLC16A7O60669 478 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 IGHG1P01857 330 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 SBK2P0C263 348 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 PSKH1P11801 424 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 NAA10P41227 235 aaPredicted RBP10.98□□□□□ -0.65
PNKP-217ENST00000625216 RPL5P46777 297 aaKnown RBP10.98□□□□□ -0.65
PNKP-217ENST00000625216 ETV1P50549 477 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 CLRN1P58418 232 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 C11orf71Q6IPW1 123 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 LINGO2Q7L985 606 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 HDDC2Q7Z4H3 204 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 SATL1Q86VE3 508 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 ZNF511Q8NB15 262 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 TMIGD2Q96BF3 282 aa10.98□□□□□ -0.65
PNKP-217ENST00000625216 SLC25A44Q96H78 314 aaPredicted RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms