RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 MAP6Q96JE9 813 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 ZNF184Q99676 751 aaPredicted RBP17.1■□□□□ 0.33
UPF3A-211ENST00000618700 TMEM204Q9BSN7 226 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 YIPF3Q9GZM5 350 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 ADGRL4Q9HBW9 690 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 CADP27708 2225 aa17.1■□□□□ 0.33
UPF3A-211ENST00000618700 IQCMA0A1B0GVH7 501 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 SYNGR3O43761 229 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 PTHP01270 115 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 MRPL3P09001 348 aaKnown RBP17.09■□□□□ 0.33
UPF3A-211ENST00000618700 SBK2P0C263 348 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 APEX1P27695 318 aaKnown RBP17.09■□□□□ 0.33
UPF3A-211ENST00000618700 NUDT6P53370 316 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 ZNF91Q05481 1191 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 SPOCK1Q08629 439 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 LAIR2Q6ISS4 152 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 DCXRQ7Z4W1 244 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 THAP5Q7Z6K1 395 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 CDC20BQ86Y33 519 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 ALDH16A1Q8IZ83 802 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 OTOSQ8NHW6 89 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 C14orf79Q96F83 325 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 PIK3IP1Q96FE7 263 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 HDHD2Q9H0R4 259 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 PLEK2Q9NYT0 353 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 RAB26Q9ULW5 256 aa17.09■□□□□ 0.33
UPF3A-211ENST00000618700 CENPEQ02224 2701 aa17.08■□□□□ 0.33
UPF3A-211ENST00000618700 ABCA4P78363 2273 aa17.08■□□□□ 0.33
UPF3A-211ENST00000618700 LOC100509620A0A075B734 347 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 IGHV2OR16-5A0A0B4J2B6 119 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 SNTNA6NMZ2 147 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 ABCD4O14678 606 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 DBTP11182 482 aaKnown RBP17.08■□□□□ 0.32
UPF3A-211ENST00000618700 MYF6P23409 242 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 CALCRP30988 508 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 MTNR1AP48039 350 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 CDK5R2Q13319 367 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 SMN1Q16637 294 aaKnown RBP17.08■□□□□ 0.32
UPF3A-211ENST00000618700 ELFN2Q5R3F8 820 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 SLC30A7Q8NEW0 376 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 IL17RDQ8NFM7 739 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 OR51G2Q8NGK0 314 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 SMAP2Q8WU79 429 aaPredicted RBP17.08■□□□□ 0.32
UPF3A-211ENST00000618700 POM121L2Q96KW2 1035 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 COQ7Q99807 217 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 DDX28Q9NUL7 540 aaKnown RBP17.08■□□□□ 0.32
UPF3A-211ENST00000618700 KLHDC2Q9Y2U9 406 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 CELSR2Q9HCU4 2923 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 UNC79Q9P2D8 2635 aa17.08■□□□□ 0.32
UPF3A-211ENST00000618700 CTAG2O75638 210 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 CD3EP07766 207 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 ZNF35P13682 527 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 ALOX5APP20292 161 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 STOMP27105 288 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 APLNRP35414 380 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 HTR5AP47898 357 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 EIF2B1Q14232 305 aaKnown RBP17.07■□□□□ 0.32
UPF3A-211ENST00000618700 KRTAP27-1Q3LI81 207 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 ZNF787Q6DD87 383 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 SLC35F2Q8IXU6 374 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 OR1F12Q8NHA8 337 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 RNF133Q8WVZ7 376 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 SLAMF6Q96DU3 332 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 RNFT2Q96EX2 444 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 AMELYQ99218 206 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 MNTQ99583 582 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 ABHD6Q9BV23 337 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 MRPS18AQ9NVS2 196 aaKnown RBP17.07■□□□□ 0.32
UPF3A-211ENST00000618700 COPS3Q9UNS2 423 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 RNF115Q9Y4L5 304 aa17.07■□□□□ 0.32
UPF3A-211ENST00000618700 FBN2P35556 2912 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 NBPF19A0A087WUL8 3843 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 A0A1W2PPR1 153 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 SHISA9B4DS77 424 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 ATP6V1G2-DDX39BF2Z307 99 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 J3QRE1 110 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 APOL3O95236 402 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 CRYAAP02489 173 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 LYNP07948 512 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 TBC1D28Q2M2D7 210 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 ADAM5Q6NVV9 412 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 TMEM154Q6P9G4 183 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 PAQR4Q8N4S7 273 aaPredicted RBP17.06■□□□□ 0.32
UPF3A-211ENST00000618700 RFLNBQ8N5W9 214 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 OR1J2Q8NGS2 313 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 RADILQ96JH8 1075 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 ATF6BQ99941 703 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 RPL36Q9Y3U8 105 aaKnown RBP17.06■□□□□ 0.32
UPF3A-211ENST00000618700 TMEM14AQ9Y6G1 99 aa17.06■□□□□ 0.32
UPF3A-211ENST00000618700 ICMTO60725 284 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 PLAUP00749 431 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 CCL2P13500 99 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 OTX1P32242 354 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-211ENST00000618700 SLC15A1P46059 708 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 GDI2P50395 445 aaKnown RBP17.05■□□□□ 0.32
UPF3A-211ENST00000618700 HCCSP53701 268 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 ECH1Q13011 328 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 RSPO1Q2MKA7 263 aaPredicted RBP17.05■□□□□ 0.32
UPF3A-211ENST00000618700 TUSC1Q2TAM9 212 aa17.05■□□□□ 0.32
UPF3A-211ENST00000618700 KBTBD8Q8NFY9 601 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms