RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 PPP1R1AQ13522 171 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 FAM74A3Q4VXF1 159 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 FJX1Q86VR8 437 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 OR52N4Q8NGI2 321 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 OR2I1PQ8NGU4 316 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 RPS4Y2Q8TD47 263 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 GPX8Q8TED1 209 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 MAFIPQ8WZ33 124 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 ROBO4Q8WZ75 1007 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 MARVELD3Q96A59 401 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 SLC7A5P2Q9GIP4 190 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 TMEM231Q9H6L2 316 aa12.6□□□□□ -0.39
COL6A1-207ENST00000612273 KANTRA0A1W2PQU2 76 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 D6RAR5 112 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 TRIM77I1YAP6 450 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 ICAM2P13598 275 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 DLSTP36957 453 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 ZNF248Q8NDW4 579 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 OR5M9Q8NGP3 310 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 RNF128Q8TEB7 428 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 C15orf40Q8WUR7 153 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 BANF2Q9H503 90 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 ASF1BQ9NVP2 202 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 CTSFQ9UBX1 484 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 HHLA2Q9UM44 414 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 F12P00748 615 aaPredicted RBP12.59□□□□□ -0.39
COL6A1-207ENST00000612273 PGCP20142 388 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 HRH1P35367 487 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 SERTAD2Q14140 314 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 KIAA0895LQ68EN5 471 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 PAPD4Q6PIY7 484 aaKnown RBP12.59□□□□□ -0.39
COL6A1-207ENST00000612273 ADAD2Q8NCV1 583 aaKnown RBP12.59□□□□□ -0.39
COL6A1-207ENST00000612273 PXT1Q8NFP0 134 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 MRI1Q9BV20 369 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 CNTD2Q9H8S5 307 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 OR2S2Q9NQN1 319 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 LANCL2Q9NS86 450 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 OR52A1Q9UKL2 312 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 VSIG4Q9Y279 399 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 A0A1W2PP11 408 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 A0A1W2PPC1 479 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 RHPN2P1A8MT19 583 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 ZNF432O94892 652 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 H2BFMP0C1H6 154 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 CSRP1P21291 193 aaKnown RBP12.59□□□□□ -0.39
COL6A1-207ENST00000612273 LBX1P52954 281 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 FOXK1P85037 733 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 INPP5JQ15735 1006 aaPredicted RBP12.59□□□□□ -0.39
COL6A1-207ENST00000612273 ISXQ2M1V0 245 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 TMPPEQ6ZT21 453 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 GALNTL5Q7Z4T8 443 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 ADAMTS18Q8TE60 1221 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 CCDC107Q8WV48 283 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 LRRC46Q96FV0 321 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 SLC46A1Q96NT5 459 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 HS3ST3A1Q9Y663 406 aa12.59□□□□□ -0.39
COL6A1-207ENST00000612273 FAM221BA6H8Z2 402 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 OR2AT4A6NND4 320 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 NPIPA5E9PKD4 350 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 DDAH2O95865 285 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 DRD1P21728 446 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 CDAP32320 146 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 AKR1D1P51857 326 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 EBPQ15125 230 aaKnown RBP12.58□□□□□ -0.4
COL6A1-207ENST00000612273 NAXEQ8NCW5 288 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 OR13C8Q8NGS7 320 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 NICN1Q9BSH3 213 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 COPS7AQ9UBW8 275 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 NPIPA1Q9UND3 350 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 LHX6Q9UPM6 363 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 B3GALNT1O75752 331 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 IFNA6P05013 189 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 ERCC1P07992 297 aaPredicted RBP12.58□□□□□ -0.4
COL6A1-207ENST00000612273 BLKP51451 505 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 SLC26A10Q8NG04 563 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 ASB12Q8WXK4 309 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 MRPS24Q96EL2 167 aaKnown RBP12.58□□□□□ -0.4
COL6A1-207ENST00000612273 CPNE2Q96FN4 548 aaPredicted RBP12.58□□□□□ -0.4
COL6A1-207ENST00000612273 SHARPINQ9H0F6 387 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 SAV1Q9H4B6 383 aaPredicted RBP12.58□□□□□ -0.4
COL6A1-207ENST00000612273 IFT46Q9NQC8 304 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 SUSD2Q9UGT4 822 aa12.58□□□□□ -0.4
COL6A1-207ENST00000612273 IGLV1-36A0A0B4J1U3 117 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 HMSDA8MTL9 139 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 FADS1O60427 444 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 HTR3BO95264 441 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 ABOP16442 354 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 IGLV3-21P80748 117 aaPredicted RBP12.57□□□□□ -0.4
COL6A1-207ENST00000612273 MC2RQ01718 297 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF273Q14593 569 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 SLC9A3R2Q15599 337 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 TMEM200AQ86VY9 491 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 OR52N5Q8NH56 324 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 ZNF721Q8TF20 911 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 TMEM41AQ96HV5 264 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 FAM71F1Q96KD3 344 aaPredicted RBP12.57□□□□□ -0.4
COL6A1-207ENST00000612273 ADAM19Q9H013 955 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 PRMT8Q9NR22 394 aaPredicted RBP12.57□□□□□ -0.4
COL6A1-207ENST00000612273 MBD2Q9UBB5 411 aa12.57□□□□□ -0.4
COL6A1-207ENST00000612273 UPB1Q9UBR1 384 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms