RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 GDF2Q9UK05 429 aaPredicted RBP14.27□□□□□ -0.12
CCDC28A-202ENST00000611852 OVOL3O00110 214 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 ZNF593O00488 134 aaPredicted RBP14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 TLX2O43763 284 aaPredicted RBP14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 TMCC2O75069 709 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 OR4A8P0C604 315 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 FAM157BP0CG42 384 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 GSTT1P30711 240 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 GLRXP35754 106 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 SERPINF1P36955 418 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 WNT5AP41221 380 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 ENTPD1P49961 510 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 UCP2P55851 309 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 ZIK1Q3SY52 487 aaPredicted RBP14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 TEX30Q5JUR7 227 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 ELFN2Q5R3F8 820 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 C11orf71Q6IPW1 123 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 TCEANCQ8N8B7 351 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 OR1F12Q8NHA8 337 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 MAP6Q96JE9 813 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 HDHD2Q9H0R4 259 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 BEX4Q9NWD9 120 aaPredicted RBP14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 ATPIF1Q9UII2 106 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 USF3Q68DE3 2245 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 CREBBPQ92793 2442 aa14.26□□□□□ -0.13
CCDC28A-202ENST00000611852 E9PQ18 207 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 ICMTO60725 284 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 RAD52P43351 418 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 TRIP10Q15642 601 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 MSMPQ1L6U9 139 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 MST1LQ2TV78 715 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 SLC35D3Q5M8T2 416 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 ZNF101Q8IZC7 436 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 TMEM163Q8TC26 289 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 SLC7A6Q92536 515 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 ZMYND19Q96E35 227 aaPredicted RBP14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 HRASLS5Q96KN8 279 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 IL4I1Q96RQ9 567 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 INTS14Q96SY0 518 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 MBOAT4Q96T53 435 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 BCL2L14Q9BZR8 327 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 VCX3BQ9H321 246 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 OR51B6Q9H340 312 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 TOR3AQ9H497 397 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 CXorf56Q9H5V9 222 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 PNRC2Q9NPJ4 139 aaKnown RBP14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 ARID1AO14497 2285 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 VSTM5A8MXK1 200 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 SPARCP09486 303 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 VHLP40337 213 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 RPS7P62081 194 aaKnown RBP14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 RPS23P62266 143 aaKnown RBP14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 APOFQ13790 326 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 EFNB3Q15768 340 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 LRRC36Q1X8D7 754 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 SWI5Q1ZZU3 235 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 AADACL4Q5VUY2 407 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 TMEM154Q6P9G4 183 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 BCDIN3DQ7Z5W3 292 aaKnown RBP14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 ERI1Q8IV48 349 aaKnown RBP14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 TIGD4Q8IY51 512 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 OR10S1Q8NGN2 331 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 TEAD3Q99594 435 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 PITX2Q99697 317 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 COQ7Q99807 217 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 FOXC2Q99958 501 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 EIF3KQ9UBQ5 218 aaKnown RBP14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 ITGB1BP2Q9UKP3 347 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 CMAHPQ9Y471 501 aa14.25□□□□□ -0.13
CCDC28A-202ENST00000611852 CCDC182A6NF36 153 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 SMPD2O60906 423 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 DBHP09172 617 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 CDKN1AP38936 164 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 CDC42P60953 191 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 ERVS71-1P61550 626 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 RSPO1Q2MKA7 263 aaPredicted RBP14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 NXNL2Q5VZ03 156 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 LPCAT4Q643R3 524 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 DPY19L4Q7Z388 723 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 DCXRQ7Z4W1 244 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 OR6N2Q8NGY6 317 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 MRPL24Q96A35 216 aaKnown RBP14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 C4orf45Q96LM5 186 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 ATF6BQ99941 703 aa14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 ZNF701Q9NV72 531 aaPredicted RBP14.24□□□□□ -0.13
CCDC28A-202ENST00000611852 ARFGEF3Q5TH69 2177 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 TMEM129A0AVI4 362 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 B9A039 149 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 SELENOFO60613 162 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 ABHD16AO95870 558 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 NGFP01138 241 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 LCKP06239 509 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 PAX1P15863 534 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 PEX2P28328 305 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 ART1P52961 327 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 ECH1Q13011 328 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 KRTAP27-1Q3LI81 207 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 RGS7BPQ6MZT1 257 aaPredicted RBP14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 UNQ6126/PRO20091Q6UXV3 157 aa14.23□□□□□ -0.13
CCDC28A-202ENST00000611852 RFPL4BQ6ZWI9 263 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms