RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NPPAP01160 153 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 EPOP01588 193 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 HIST1H2AGP0C0S8 130 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ANPEPP15144 967 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 IGLL1P15814 213 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 NUP62P37198 522 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 FNTAP49354 379 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 VEGFCP49767 419 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 IDH3GP51553 393 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 LMO4P61968 165 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 TUBA1BP68363 451 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 BST1Q10588 318 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 PAFAH1B3Q15102 231 aaKnown RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 BCL2A1Q16548 175 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 PCK2Q16822 640 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 SPANXN2Q5MJ10 180 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ELFN2Q5R3F8 820 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 PRAMEF5Q5TYX0 476 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 PRAMEF6Q5VXH4 476 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 TTC23Q5W5X9 447 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ACSM5Q6NUN0 579 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 NIPAL1Q6NVV3 410 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 CENPUQ71F23 418 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 CENPQQ7L2Z9 268 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 TRPM8Q7Z2W7 1104 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 LHFPL4Q7Z7J7 247 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 FOXRED2Q8IWF2 684 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ZCCHC24Q8N2G6 241 aaKnown RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 SLC43A2Q8N370 569 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 TMEM99Q8N816 258 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ANKFN1Q8N957 763 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 SUN5Q8TC36 379 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 RNF128Q8TEB7 428 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF721Q8TF20 911 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 HIST1H2ACQ93077 130 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 MCHR2Q969V1 340 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 NRBF2Q96F24 287 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 SLC47A1Q96FL8 570 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 GMPPAQ96IJ6 420 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 DNAJC1Q96KC8 554 aaKnown RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 LRR1Q96L50 414 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 EPYCQ99645 322 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 CHP1Q99653 195 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 HEATR1Q9H583 2144 aaKnown RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 NEK6Q9HC98 313 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 FAM120CQ9NX05 1096 aaKnown RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 DKKL1Q9UK85 242 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 TMED7Q9Y3B3 224 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 PAM16Q9Y3D7 125 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 TMED3Q9Y3Q3 217 aa3.57□□□□□ -1.84
LINC00540-201ENST00000611481 SPIN1Q9Y657 262 aaPredicted RBP3.57□□□□□ -1.84
LINC00540-201ENST00000611481 ARHGAP32A7KAX9 2087 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 IGHV3OR16-10A0A075B7F0 116 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 TRAV26-1A0A087WT03 109 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 A0A1W2PR80 420 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 C5orf60A6NFR6 353 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ACOD1A6NK06 481 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF879B4DU55 563 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ATP6V1G2-DDX39BF2Z307 99 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 SDHDO14521 159 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ARPC1BO15143 372 aaKnown RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ARPC3O15145 178 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 SYT7O43581 403 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 CLN5O75503 358 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 CBR3O75828 277 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 SERPINI2O75830 405 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 GNA14O95837 355 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 KRT14P02533 472 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ERCC1P07992 297 aaPredicted RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 GSTA2P09210 222 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 CCDC172P0C7W6 258 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 DBTP11182 482 aaKnown RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ERGP11308 486 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 AGTR1P30556 359 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 SRD5A2P31213 254 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 CDKN1BP46527 198 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 OR3A3P47888 321 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF140P52738 457 aaPredicted RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 STX4Q12846 297 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 TRAF3Q13114 568 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 MAB21L1Q13394 359 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ITIH4Q14624 930 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 TMED2Q15363 201 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 EFNB3Q15768 340 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 GPAT3Q53EU6 434 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 KLF17Q5JT82 389 aaPredicted RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 ZNF658Q5TYW1 1059 aaPredicted RBP3.56□□□□□ -1.84
LINC00540-201ENST00000611481 TTC27Q6P3X3 843 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 Q75L30 129 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 C16orf62Q7Z3J2 963 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 PRUNE1Q86TP1 453 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 KRT222Q8N1A0 295 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 PRSS35Q8N3Z0 413 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 COMMD1Q8N668 190 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 WDSUB1Q8N9V3 476 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 MFSD9Q8NBP5 474 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 NPEPL1Q8NDH3 523 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 C17orf47Q8NEP4 570 aa3.56□□□□□ -1.84
LINC00540-201ENST00000611481 TRPV3Q8NET8 790 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms