RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 RPP14O95059 124 aaKnown RBP13.36□□□□□ -0.27
TRIM28-209ENST00000597423 CD1AP06126 327 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 CD79AP11912 226 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 CELP19835 753 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 IGHV1-2P23083 117 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 CD79BP40259 229 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 OPRL1P41146 370 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 TMBIM6P55061 237 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 RAB35Q15286 201 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 GPR107Q5VW38 600 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 LIPKQ5VXJ0 399 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 FDX2Q6P4F2 183 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 CFAP77Q6ZQR2 320 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 MRGPRGQ86SM5 289 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 CLVS1Q8IUQ0 354 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-209ENST00000597423 GABRG1Q8N1C3 465 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 C17orf78Q8N4C9 275 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 MS4A15Q8N5U1 240 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 RFLNBQ8N5W9 214 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF433Q8N7K0 673 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-209ENST00000597423 NAXEQ8NCW5 288 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF420Q8TAQ5 688 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-209ENST00000597423 YIPF6Q96EC8 236 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 DMRTA2Q96SC8 542 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 AMELYQ99218 206 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 ATF6BQ99941 703 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 BCL7BQ9BQE9 202 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 OPN3Q9H1Y3 402 aaPredicted RBP13.36□□□□□ -0.27
TRIM28-209ENST00000597423 OBP2BQ9NPH6 170 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 ACOXLQ9NUZ1 547 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 COQ3Q9NZJ6 369 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 FBXL3Q9UKT7 428 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 PKD1L2Q7Z442 2459 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 GTF3C1Q12789 2109 aa13.36□□□□□ -0.27
TRIM28-209ENST00000597423 TMEM269A0A1B0GVZ9 245 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 H3BSA7 217 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 MAGEB4O15481 346 aaPredicted RBP13.35□□□□□ -0.27
TRIM28-209ENST00000597423 PLPP2O43688 288 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 GPRIN2O60269 458 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 SERPINA3P01011 423 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 PSKH1P11801 424 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF32P17041 273 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 COX5AP20674 150 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 BMP5P22003 454 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 IL32P24001 234 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 LIPAP38571 399 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 CCR9P51686 369 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 ALKBH1Q13686 389 aaKnown RBP13.35□□□□□ -0.27
TRIM28-209ENST00000597423 TBRG1Q3YBR2 411 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 SFRP5Q5T4F7 317 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 GDPGP1Q6ZNW5 385 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 P2RY8Q86VZ1 359 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 ANKRD13BQ86YJ7 626 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 PHC2Q8IXK0 858 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 OR1F12Q8NHA8 337 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 ASB5Q8WWX0 329 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 HTRA1Q92743 480 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 KCNJ15Q99712 375 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 COQ7Q99807 217 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 FUNDC2Q9BWH2 189 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 OR2H1Q9GZK4 316 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 COMMD4Q9H0A8 199 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 DDX28Q9NUL7 540 aaKnown RBP13.35□□□□□ -0.27
TRIM28-209ENST00000597423 NDUFB11Q9NX14 153 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 SLC5A6Q9Y289 635 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 LRP12Q9Y561 859 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 R4GMQ9 66 aa13.35□□□□□ -0.27
TRIM28-209ENST00000597423 PRRC2CQ9Y520 2896 aaKnown RBP13.35□□□□□ -0.27
TRIM28-209ENST00000597423 SPTA1P02549 2419 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 ARPC4-TTLL3A0A0A6YYG9 625 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 IQCMA0A1B0GVH7 501 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 OR6C6A6NF89 314 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 A8MXE2 369 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 EEF1E1-BLOC1S5C9J1V9 151 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 ZNF701M0R085 212 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-209ENST00000597423 EEF1E1O43324 174 aaKnown RBP13.34□□□□□ -0.27
TRIM28-209ENST00000597423 DOK2O60496 412 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 ABHD16AO95870 558 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 WNT11O96014 354 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 HLA-DPB1P04440 258 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 COX5BP10606 129 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 GABRA5P31644 462 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 PSMB10P40306 273 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 MMP16P51512 607 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 FOXG1P55316 489 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-209ENST00000597423 TPTEP56180 551 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 RAB1AP62820 205 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 PSG4Q00888 419 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 GABRA6Q16445 453 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 CCDC92Q53HC0 331 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-209ENST00000597423 DMKNQ6E0U4 476 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-209ENST00000597423 ARL9Q6T311 187 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 BHLHA15Q7RTS1 189 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-209ENST00000597423 SSX8Q7RTT4 187 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 CXorf67Q86X51 503 aaPredicted RBP13.34□□□□□ -0.27
TRIM28-209ENST00000597423 STEAP2Q8NFT2 490 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 RAB2BQ8WUD1 216 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 LRRC46Q96FV0 321 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 MOB1AQ9H8S9 216 aa13.34□□□□□ -0.27
TRIM28-209ENST00000597423 ATPIF1Q9UII2 106 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms