RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 TMEM154Q6P9G4 183 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 ARL9Q6T311 187 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 RASSF6Q6ZTQ3 369 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 ZBTB46Q86UZ6 589 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 AQP12AQ8IXF9 295 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 OR6V1Q8N148 313 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 SLC26A10Q8NG04 563 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 OR8D4Q8NGM9 314 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 KLF14Q8TD94 323 aaPredicted RBP12.9□□□□□ -0.34
TRIM28-205ENST00000595028 GTF3AQ92664 365 aaKnown RBP12.9□□□□□ -0.34
TRIM28-205ENST00000595028 OR2J1Q9GZK6 312 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 FN3KQ9H479 309 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 CHODLQ9H9P2 273 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 ELOVL3Q9HB03 270 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 ATPIF1Q9UII2 106 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 LHFPL6Q9Y693 200 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 U3KQV3 271 aa12.9□□□□□ -0.34
TRIM28-205ENST00000595028 DHRS12A0PJE2 317 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 OR6C68A6NDL8 312 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 GYG2O15488 501 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 WIPF1O43516 503 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 GASTP01350 101 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 MT-ND5P03915 603 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 TACSTD2P09758 323 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 ACHEP22303 614 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 CENPAP49450 140 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 ARHGDIAP52565 204 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.89□□□□□ -0.35
TRIM28-205ENST00000595028 DBPQ10586 325 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-205ENST00000595028 GK3PQ14409 553 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 MOGQ16653 247 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 MEP1BQ16820 701 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 MICAQ29983 383 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 CCDC92Q53HC0 331 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-205ENST00000595028 SLC35F1Q5T1Q4 408 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 CYB5R2Q6BCY4 276 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-205ENST00000595028 NPEPL1Q8NDH3 523 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 OR1F12Q8NHA8 337 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 RDH5Q92781 318 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 YIPF5Q969M3 257 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 SLC7A6OSQ96CW6 309 aaPredicted RBP12.89□□□□□ -0.35
TRIM28-205ENST00000595028 DGCR6LQ9BY27 220 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 TBC1D23Q9NUY8 699 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 TBCCD1Q9NVR7 557 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 NKIRAS2Q9NYR9 191 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 IL20Q9NYY1 176 aa12.89□□□□□ -0.35
TRIM28-205ENST00000595028 RER1O15258 196 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 LILRA1O75019 489 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 IFNA2P01563 188 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 GSTM3P21266 225 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 CHN2P52757 468 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 HIST1H3AP68431 136 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 COX10Q12887 443 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 FLOT2Q14254 428 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 TRIP10Q15642 601 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 HIST2H3PS2Q5TEC6 136 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 HIST2H3AQ71DI3 136 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 OR10G2Q8NGC3 310 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 OR52E2Q8NGJ4 325 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 CANT1Q8WVQ1 401 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 SLC7A6Q92536 515 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 CHID1Q9BWS9 393 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 HDHD2Q9H0R4 259 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 SRA1Q9HD15 236 aaKnown RBP12.88□□□□□ -0.35
TRIM28-205ENST00000595028 CGGBP1Q9UFW8 167 aaPredicted RBP12.88□□□□□ -0.35
TRIM28-205ENST00000595028 TANC2Q9HCD6 1990 aa12.88□□□□□ -0.35
TRIM28-205ENST00000595028 PLSCR5A0PG75 271 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 LRP5LA4QPB2 252 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 ARRDC5A6NEK1 342 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 ZSCAN5BA6NJL1 495 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 RP2O75695 350 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 SOX14O95416 240 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 CST1P01037 141 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 TFP02787 698 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 HOXB6P17509 224 aaKnown RBP12.87□□□□□ -0.35
TRIM28-205ENST00000595028 COL8A2P25067 703 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 GPR6P46095 362 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-205ENST00000595028 ZNF81P51508 661 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 MMP15P51511 669 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 CCL8P80075 99 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 LNX2Q8N448 690 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 CYB561A3Q8NBI2 242 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 GJC3Q8NFK1 279 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 MSI2Q96DH6 328 aaKnown RBP12.87□□□□□ -0.35
TRIM28-205ENST00000595028 DCLRE1CQ96SD1 692 aaKnown RBP12.87□□□□□ -0.35
TRIM28-205ENST00000595028 COQ7Q99807 217 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 POFUT1Q9H488 388 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 ZNF275Q9NSD4 429 aaPredicted RBP12.87□□□□□ -0.35
TRIM28-205ENST00000595028 GRIP1Q9Y3R0 1128 aa12.87□□□□□ -0.35
TRIM28-205ENST00000595028 J3QW42 95 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 DNAJC8O75937 253 aaPredicted RBP12.86□□□□□ -0.35
TRIM28-205ENST00000595028 ADH4P08319 380 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 DBHP09172 617 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 TUBG1P23258 451 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 IL2RGP31785 369 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 TEKQ02763 1124 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 SLC36A3Q495N2 470 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 ZMAT1Q5H9K5 638 aa12.86□□□□□ -0.35
TRIM28-205ENST00000595028 FAM209AQ5JX71 171 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms