RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 PSKH1P11801 424 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 CD36P16671 472 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 PSMB1P20618 241 aaKnown RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 IGHV1-2P23083 117 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 GABRA5P31644 462 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 RPS27P42677 84 aaKnown RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 ZNF829Q3KNS6 432 aaPredicted RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 TP53I3Q53FA7 332 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 DMKNQ6E0U4 476 aaPredicted RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 TMEM53Q6P2H8 277 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 CORO6Q6QEF8 472 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 KLHL24Q6TFL4 600 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 LINC00346Q8IVM7 164 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 SKA3Q8IX90 412 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 PHC2Q8IXK0 858 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 RPRMLQ8N4K4 120 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 ZNF433Q8N7K0 673 aaPredicted RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 FAM169BQ8N8A8 192 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 ZNF610Q8N9Z0 462 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 RAB2BQ8WUD1 216 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 THRSPQ92748 146 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 ITFG2Q969R8 447 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 TMIGD2Q96BF3 282 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 DGCR14Q96DF8 476 aaKnown RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 SMIM19Q96E16 107 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 AMELYQ99218 206 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 KCNJ15Q99712 375 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 SP140LQ9H930 580 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 PNRC2Q9NPJ4 139 aaKnown RBP13.38□□□□□ -0.27
SS18-215ENST00000580642 ACOXLQ9NUZ1 547 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 SLCO1C1Q9NYB5 712 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 JKAMPQ9P055 326 aa13.38□□□□□ -0.27
SS18-215ENST00000580642 DOCK7Q96N67 2140 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 ITPR1Q14643 2758 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 A0A0G2JNJ9 132 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 RER1O15258 196 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 SGCEO43556 437 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 OTX1P32242 354 aaPredicted RBP13.37□□□□□ -0.27
SS18-215ENST00000580642 LIPAP38571 399 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 CDK5R1Q15078 307 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 TAF13Q15543 124 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 GABRA6Q16445 453 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 TSTQ16762 297 aaKnown RBP13.37□□□□□ -0.27
SS18-215ENST00000580642 SFRP5Q5T4F7 317 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 CFAP77Q6ZQR2 320 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 LRRC18Q8N456 261 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 SPTSSAQ969W0 71 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 DCLRE1CQ96SD1 692 aaKnown RBP13.37□□□□□ -0.27
SS18-215ENST00000580642 ATF6BQ99941 703 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 SH3GL3Q99963 347 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 OR2H1Q9GZK4 316 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 RBM38Q9H0Z9 239 aaKnown RBP13.37□□□□□ -0.27
SS18-215ENST00000580642 CENPMQ9NSP4 180 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 Q9UFV3 132 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 ST6GALNAC2Q9UJ37 374 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 LRP12Q9Y561 859 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 R4GMQ9 66 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 MED12LQ86YW9 2145 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 USP24Q9UPU5 2620 aa13.37□□□□□ -0.27
SS18-215ENST00000580642 SVILO95425 2214 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 POLEQ07864 2286 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 CIB4A0PJX0 185 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 OR6C6A6NF89 314 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 TMEM212A6NML5 194 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 PRR32B1ATL7 298 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 NOL3O60936 208 aaKnown RBP13.36□□□□□ -0.27
SS18-215ENST00000580642 LALBAP00709 142 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 SERPINA3P01011 423 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 HLA-DPB1P04440 258 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 ZNF32P17041 273 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 CELP19835 753 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 HSD11B1P28845 292 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 TGFBR2P37173 567 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 CD79BP40259 229 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 PSMA6P60900 246 aaKnown RBP13.36□□□□□ -0.27
SS18-215ENST00000580642 UBE2NP61088 152 aaKnown RBP13.36□□□□□ -0.27
SS18-215ENST00000580642 PSG4Q00888 419 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 ALKBH1Q13686 389 aaKnown RBP13.36□□□□□ -0.27
SS18-215ENST00000580642 KRTAP27-1Q3LI81 207 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 TBRG1Q3YBR2 411 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 CCDC92Q53HC0 331 aaPredicted RBP13.36□□□□□ -0.27
SS18-215ENST00000580642 CD200R1LQ6Q8B3 271 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 LRRN1Q6UXK5 716 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 C3P1Q6ZMU1 363 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 OR10S1Q8NGN2 331 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 OR2G2Q8NGZ5 317 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 OR1F12Q8NHA8 337 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 ASB5Q8WWX0 329 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 PHYHIPQ92561 330 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 DOK1Q99704 481 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 FUNDC2Q9BWH2 189 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 B3GNT2Q9NY97 397 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 PLEK2Q9NYT0 353 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 ENPP5Q9UJA9 477 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 OSGIN2Q9Y236 505 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 CEPT1Q9Y6K0 416 aa13.36□□□□□ -0.27
SS18-215ENST00000580642 PRRC2CQ9Y520 2896 aaKnown RBP13.36□□□□□ -0.27
SS18-215ENST00000580642 TRBV2A0A0J9YWF9 115 aa13.35□□□□□ -0.27
SS18-215ENST00000580642 SYNGR3O43761 229 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms