RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 POLR1DQ9Y2S0 133 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 STARD10Q9Y365 291 aa17.64■□□□□ 0.41
CLN3-219ENST00000565778 FAM157AC9JC47 383 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 GPANK1O95872 356 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 RENP00797 406 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 GAAP10253 952 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 PCMT1P22061 227 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 TUBG1P23258 451 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 FPR3P25089 353 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 THBS2P35442 1172 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 SRP14P37108 136 aaKnown RBP17.63■□□□□ 0.41
CLN3-219ENST00000565778 LMO4P61968 165 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 PSG7Q13046 419 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 KCNMB1Q16558 191 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 GLCCI1Q86VQ1 547 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 NPEPL1Q8NDH3 523 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 OR4K13Q8NH42 304 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 OR1F12Q8NHA8 337 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 SLC7A6Q92536 515 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 RAB1CQ92928 201 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 NMNAT3Q96T66 252 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 MSL2Q9HCI7 577 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 TUBG2Q9NRH3 451 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 CGGBP1Q9UFW8 167 aaPredicted RBP17.63■□□□□ 0.41
CLN3-219ENST00000565778 B9D1Q9UPM9 204 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 CACNG2Q9Y698 323 aa17.63■□□□□ 0.41
CLN3-219ENST00000565778 ZSCAN5BA6NJL1 495 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 CLDN25C9JDP6 229 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 ARPC3O15145 178 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 RER1O15258 196 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 KRT36O76013 467 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 ANPEPP15144 967 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 HIST1H1CP16403 213 aaKnown RBP17.62■□□□□ 0.41
CLN3-219ENST00000565778 CCDC92Q53HC0 331 aaPredicted RBP17.62■□□□□ 0.41
CLN3-219ENST00000565778 ZMAT1Q5H9K5 638 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 MTX3Q5HYI7 312 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 GJC3Q8NFK1 279 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 CMBLQ96DG6 245 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 TIMD4Q96H15 378 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 COG8Q96MW5 612 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 DIRC2Q96SL1 478 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 POFUT1Q9H488 388 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 HIF1ANQ9NWT6 349 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 ACTR3BQ9P1U1 418 aa17.62■□□□□ 0.41
CLN3-219ENST00000565778 ATRQ13535 2644 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 TNFRSF11BO00300 401 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 DCTN6O00399 190 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 MSMBP08118 114 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 GSSP48637 474 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 TSPAN31Q12999 210 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 MEP1BQ16820 701 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 PGM2L1Q6PCE3 622 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 OR6V1Q8N148 313 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 PTP4A1Q93096 173 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 TMEM186Q96B77 213 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 CDADC1Q9BWV3 514 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 PURGQ9UJV8 347 aaKnown RBP17.61■□□□□ 0.41
CLN3-219ENST00000565778 WIPI2Q9Y4P8 454 aa17.61■□□□□ 0.41
CLN3-219ENST00000565778 CUBNO60494 3623 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 OR6C6A6NF89 314 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 IDH3BO43837 385 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 ADH4P08319 380 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 DBHP09172 617 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 HMGA2P52926 109 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 TNFAIP6P98066 277 aaPredicted RBP17.6■□□□□ 0.41
CLN3-219ENST00000565778 SLC35F1Q5T1Q4 408 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 ACSM5Q6NUN0 579 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 PGBD2Q6P3X8 592 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 RINLQ6ZS11 566 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 OR52E2Q8NGJ4 325 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 OR51F2Q8NH61 342 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 HAVCR1Q96D42 359 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 ZNF665Q9H7R5 613 aa17.6■□□□□ 0.41
CLN3-219ENST00000565778 RPRD1BQ9NQG5 326 aaKnown RBP17.6■□□□□ 0.41
CLN3-219ENST00000565778 IGLV1-36A0A0B4J1U3 117 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 HLA-DQA2P01906 255 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 TNFSF4P23510 183 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 SLC3A1Q07837 685 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 DBPQ10586 325 aaPredicted RBP17.59■□□□□ 0.41
CLN3-219ENST00000565778 CDK5R2Q13319 367 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 SLC36A3Q495N2 470 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 CORO6Q6QEF8 472 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 PEG10Q86TG7 708 aaKnown RBP17.59■□□□□ 0.41
CLN3-219ENST00000565778 PHC2Q8IXK0 858 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 ARHGAP24Q8N264 748 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 LINC00471Q8N535 108 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 OR5L1Q8NGL2 311 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 DCLRE1CQ96SD1 692 aaKnown RBP17.59■□□□□ 0.41
CLN3-219ENST00000565778 LHFPL6Q9Y693 200 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 COL6A5A8TX70 2615 aa17.59■□□□□ 0.41
CLN3-219ENST00000565778 UBOX5O94941 541 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 FAM107AO95990 144 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 CD55P08174 381 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 ATP6V1B2P21281 511 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 KITLGP21583 273 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 RGS6P49758 472 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 SPRNQ5BIV9 151 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 CLEC12AQ5QGZ9 265 aa17.58■□□□□ 0.4
CLN3-219ENST00000565778 FAHD2BQ6P2I3 314 aaPredicted RBP17.58■□□□□ 0.4
CLN3-219ENST00000565778 DHFR2Q86XF0 187 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms