RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 CTDNEP1O95476 244 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 SLC25A27O95847 323 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 IGHV3-43DP0DP04 118 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 GZMAP12544 262 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 ZNF24P17028 368 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 ZNF43P17038 809 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 CCR8P51685 355 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 NDUFA8P51970 172 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 CDH6P55285 790 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 YWHAGP61981 247 aaKnown RBP eCLIP3.08□□□□□ -1.92
LINC00560-201ENST00000564593 RPS21P63220 83 aaKnown RBP3.08□□□□□ -1.92
LINC00560-201ENST00000564593 CCNA1P78396 465 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 ECH1Q13011 328 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 PRAMEF20Q5VT98 475 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 SPECC1LQ69YQ0 1117 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 SLC8B1Q6J4K2 584 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 PEX26Q7Z412 305 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 EID2Q8N6I1 236 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 ZNF433Q8N7K0 673 aaPredicted RBP3.08□□□□□ -1.92
LINC00560-201ENST00000564593 HSD17B11Q8NBQ5 300 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 MDS2Q8NDY4 140 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 OR1S2Q8NGQ3 325 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 RHEBL1Q8TAI7 183 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 CXorf40AQ8TE69 158 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 TMEM54Q969K7 222 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 AURKBQ96GD4 344 aaPredicted RBP3.08□□□□□ -1.92
LINC00560-201ENST00000564593 GSDMAQ96QA5 445 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 ATP5SQ99766 215 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 SH3GL3Q99963 347 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 LZTS2Q9BRK4 669 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 GABARAPL3Q9BY60 117 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 FAM192AQ9GZU8 254 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 DNTTIP1Q9H147 329 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 UGT1A7Q9HAW7 530 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 UGT1A10Q9HAW8 530 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 UGT1A8Q9HAW9 530 aa3.08□□□□□ -1.92
LINC00560-201ENST00000564593 STOX2Q9P2F5 926 aaPredicted RBP3.08□□□□□ -1.92
LINC00560-201ENST00000564593 V9GYY5 206 aaPredicted RBP3.08□□□□□ -1.92
LINC00560-201ENST00000564593 TAF1LQ8IZX4 1826 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 UBN2Q6ZU65 1347 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 PRSS37A4D1T9 235 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 FAM25EA8MYX2 175 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 LSM1O15116 133 aaKnown RBP3.07□□□□□ -1.92
LINC00560-201ENST00000564593 SUPT3HO75486 399 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 FGFR1OPO95684 399 aaKnown RBP3.07□□□□□ -1.92
LINC00560-201ENST00000564593 PABPC4LP0CB38 370 aaKnown RBP3.07□□□□□ -1.92
LINC00560-201ENST00000564593 ADORA1P30542 326 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 CCR6P51684 374 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 CCNHP51946 323 aaPredicted RBP3.07□□□□□ -1.92
LINC00560-201ENST00000564593 GBE1Q04446 702 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 IFT88Q13099 833 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 RCN1Q15293 331 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 RAET1LQ5VY80 246 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 CARD17Q5XLA6 110 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 FAM173BQ6P4H8 233 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 H2AFVQ71UI9 128 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 BBS5Q8N3I7 341 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 LIX1Q8N485 282 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 GIMAP1Q8WWP7 306 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 KIFAP3Q92845 792 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 ASB9Q96DX5 294 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 CCDC126Q96EE4 140 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 FAM210BQ96KR6 192 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 NCOR1P1Q9H4R4 102 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 CWH43Q9H720 699 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 DMAP1Q9NPF5 467 aaPredicted RBP3.07□□□□□ -1.92
LINC00560-201ENST00000564593 IFNKQ9P0W0 207 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 PYCARDQ9ULZ3 195 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 ZNFX1Q9P2E3 1918 aaKnown RBP3.07□□□□□ -1.92
LINC00560-201ENST00000564593 MTCL1Q9Y4B5 1905 aaKnown RBP3.07□□□□□ -1.92
LINC00560-201ENST00000564593 CDK5RAP2Q96SN8 1893 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 BTAF1O14981 1849 aa3.07□□□□□ -1.92
LINC00560-201ENST00000564593 LY75O60449 1722 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 MROH7-TTC4A0A0A0MT08 1334 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 IGHV3-64DA0A0J9YX35 117 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 CASQ2O14958 399 aaPredicted RBP3.06□□□□□ -1.92
LINC00560-201ENST00000564593 AK4P27144 223 aaPredicted RBP3.06□□□□□ -1.92
LINC00560-201ENST00000564593 CASQ1P31415 396 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 LONP1P36776 959 aaKnown RBP3.06□□□□□ -1.92
LINC00560-201ENST00000564593 NSG1P42857 185 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 CDKN1BP46527 198 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 CRISP3P54108 245 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 DMTNQ08495 405 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 TMED1Q13445 227 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 TMEM183BQ1AE95 376 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 HSP90B2PQ58FF3 399 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 PIGGQ5H8A4 983 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 LCE3EQ5T5B0 92 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 LINC00173Q6ZV60 143 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 TMEM183AQ8IXX5 376 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 PDIK1LQ8N165 341 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 OR7G2Q8NG99 324 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 ELMO1Q92556 727 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 TSNARE1Q96NA8 513 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 SLC25A39Q9BZJ4 359 aaPredicted RBP3.06□□□□□ -1.92
LINC00560-201ENST00000564593 TSGA10Q9BZW7 698 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 LSM7Q9UK45 103 aaKnown RBP3.06□□□□□ -1.92
LINC00560-201ENST00000564593 KIAA1257Q9ULG3 409 aa3.06□□□□□ -1.92
LINC00560-201ENST00000564593 F11RQ9Y624 299 aaKnown RBP3.06□□□□□ -1.92
LINC00560-201ENST00000564593 SBF2Q86WG5 1849 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms