RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 EXO5Q9H790 373 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 SEC61A2Q9H9S3 476 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 PLEKHA1Q9HB21 404 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 SCPEP1Q9HB40 452 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 SLCO1C1Q9NYB5 712 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 FBLN5Q9UBX5 448 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 FOXD3Q9UJU5 478 aaPredicted RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 SLC22A13Q9Y226 551 aa6.68□□□□□ -1.34
VPS39-204ENST00000561818 SIRT4Q9Y6E7 314 aaPredicted RBP6.68□□□□□ -1.34
VPS39-204ENST00000561818 CPAMD8Q8IZJ3 1885 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 A0A0G2JK05 382 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 LOC107986453A0A1B0GWG9 222 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 FAM171A2A8MVW0 826 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 RPL36A-HNRNPH2H7BZ11 118 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 AGRPO00253 132 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 TNFSF11O14788 317 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 SYT7O43581 403 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 EFNA2O43921 213 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 GDF9O60383 454 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 PRAF2O60831 178 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 MRPL33O75394 65 aaKnown RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 KRT33AO76009 404 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 GLSO94925 669 aaPredicted RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 ALDOBP05062 364 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 CELA2AP08217 269 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 CD37P11049 281 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 HLA-DOBP13765 273 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 CPN1P15169 458 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ZNF708P17019 499 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 RAB3AP20336 220 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 CCL1P22362 96 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 THBS2P35442 1172 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 EIF1AXP47813 144 aaKnown RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 TPTEP56180 551 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 FOXL2P58012 376 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 NANOS3P60323 173 aaKnown RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 CAMK2BQ13554 666 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 CAMK2DQ13557 499 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 COL9A2Q14055 689 aaPredicted RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 ZNF79Q15937 498 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 SLC36A2Q495M3 483 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 CEP78Q5JTW2 689 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ELFN2Q5R3F8 820 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 TMEM69Q5SWH9 247 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ZBTB37Q5TC79 503 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 LRFN4Q6PJG9 635 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 IGFL2Q6UWQ7 119 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 AAED1Q7RTV5 226 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 FGD2Q7Z6J4 655 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ADGRE4PQ86SQ3 457 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 GGNQ86UU5 652 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 GHDCQ8N2G8 530 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 SLC22A24Q8N4F4 322 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 TOMM5Q8N4H5 51 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ZNF433Q8N7K0 673 aaPredicted RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 DUSP18Q8NEJ0 188 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 DEFB124Q8NES8 71 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 IL17RDQ8NFM7 739 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 OR10D3Q8NH80 312 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 SMIM4Q8WVI0 70 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 FCAMRQ8WWV6 532 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ASB5Q8WWX0 329 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ZNF524Q96C55 264 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 RNF31Q96EP0 1072 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 TRAF4Q9BUZ4 470 aaPredicted RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 TTTY12Q9BZ98 90 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 PRRG4Q9BZD6 226 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 OR10A2Q9H208 303 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 TMEM185BQ9H7F4 350 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 METTL17Q9H7H0 456 aaPredicted RBP6.67□□□□□ -1.34
VPS39-204ENST00000561818 LIN7BQ9HAP6 207 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 BCO1Q9HAY6 547 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ASCL3Q9NQ33 180 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 CENPMQ9NSP4 180 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 FAM206AQ9NX38 181 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 ITGB1BP2Q9UKP3 347 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 GTF2A1LQ9UNN4 478 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 EMC9Q9Y3B6 208 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 TIMM10BQ9Y5J6 103 aa6.67□□□□□ -1.34
VPS39-204ENST00000561818 KNTC1P50748 2209 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 A0A0J9YW62 118 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 FAM240BA0A1B0GVZ2 78 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 A0A1W2PQ09 198 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 OR14I1A6ND48 311 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ZNF587BE7ETH6 402 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 SMAD9O15198 467 aaKnown RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 LYRM1O43325 122 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 TPD52L2O43399 206 aaKnown RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 XRCC3O43542 346 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 SRSF10O75494 262 aaKnown RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 WDPCPO95876 746 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 DHFRP00374 187 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 SERPINA5P05154 406 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 CSF1P09603 554 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 CSF3P09919 207 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 CLEC2LP0C7M8 214 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 IGFBP3P17936 291 aaPredicted RBP6.66□□□□□ -1.34
VPS39-204ENST00000561818 ATF1P18846 271 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 ELK1P19419 428 aa6.66□□□□□ -1.34
VPS39-204ENST00000561818 TBPP20226 339 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms