RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 DBHP09172 617 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 GNAO1P09471 354 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 COX5BP10606 129 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 HTR1FP30939 366 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 WNT5AP41221 380 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 ELFN2Q5R3F8 820 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 TTC23Q5W5X9 447 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 OR2AJ1Q8NGZ0 328 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 OR1F12Q8NHA8 337 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 LIME1Q9H400 295 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 UBTD1Q9HAC8 227 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 ADGRL4Q9HBW9 690 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 ATP23Q9Y6H3 246 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 PLCE1Q9P212 2302 aa18.82■□□□□ 0.6
SNX1-210ENST00000560260 APLNRP35414 380 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 HCCSP53701 268 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 NKX6-1P78426 367 aaPredicted RBP18.81■□□□□ 0.6
SNX1-210ENST00000560260 MAD2L1BPQ15013 274 aaPredicted RBP18.81■□□□□ 0.6
SNX1-210ENST00000560260 OCLNQ16625 522 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 TBC1D28Q2M2D7 210 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 RSPO1Q2MKA7 263 aaPredicted RBP18.81■□□□□ 0.6
SNX1-210ENST00000560260 KRT80Q6KB66 452 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 ALDH16A1Q8IZ83 802 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 IL17RDQ8NFM7 739 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 KCNS3Q9BQ31 491 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 HDHD2Q9H0R4 259 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 CDH20Q9HBT6 801 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 HAO2Q9NYQ3 351 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 H2AFY2Q9P0M6 372 aaPredicted RBP18.81■□□□□ 0.6
SNX1-210ENST00000560260 COPS3Q9UNS2 423 aa18.81■□□□□ 0.6
SNX1-210ENST00000560260 CSMD2Q7Z408 3487 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 C5orf49A4QMS7 147 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 CYSRT1A8MQ03 144 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 H0YAE9 185 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 H0YJX3 145 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 HS3ST1O14792 307 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 WBP4O75554 376 aaKnown RBP18.8■□□□□ 0.6
SNX1-210ENST00000560260 APOL3O95236 402 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 PTHP01270 115 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 CCNOP22674 350 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 GDI2P50395 445 aaKnown RBP18.8■□□□□ 0.6
SNX1-210ENST00000560260 EIF2B1Q14232 305 aaKnown RBP18.8■□□□□ 0.6
SNX1-210ENST00000560260 MSMPQ1L6U9 139 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 KRTAP27-1Q3LI81 207 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 C6orf52Q5T4I8 152 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 IZUMO2Q6UXV1 221 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 USP51Q70EK9 711 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 SLC16A9Q7RTY1 509 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 RFLNBQ8N5W9 214 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 OTOSQ8NHW6 89 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 TFAP2CQ92754 450 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 CNN2Q99439 309 aaKnown RBP18.8■□□□□ 0.6
SNX1-210ENST00000560260 COQ7Q99807 217 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 APOL4Q9BPW4 351 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 ABHD6Q9BV23 337 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 WARS2Q9UGM6 360 aaKnown RBP18.8■□□□□ 0.6
SNX1-210ENST00000560260 ATPIF1Q9UII2 106 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 POU2F3Q9UKI9 436 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 ITPR2Q14571 2701 aa18.8■□□□□ 0.6
SNX1-210ENST00000560260 SETXQ7Z333 2677 aaKnown RBP18.8■□□□□ 0.6
SNX1-210ENST00000560260 PRR32B1ATL7 298 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 GPRIN2O60269 458 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 NUDT6P53370 316 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 IL5RAQ01344 420 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 SNTB2Q13425 540 aaKnown RBP18.79■□□□□ 0.6
SNX1-210ENST00000560260 SPATC1Q76KD6 591 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 SHFQ7M4L6 423 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 ZNF101Q8IZC7 436 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 NUP37Q8NFH4 326 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 OR51G2Q8NGK0 314 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 SLAMF6Q96DU3 332 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 OR51B6Q9H340 312 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 DDX28Q9NUL7 540 aaKnown RBP18.79■□□□□ 0.6
SNX1-210ENST00000560260 CISD1Q9NZ45 108 aaKnown RBP18.79■□□□□ 0.6
SNX1-210ENST00000560260 CACNA1DQ01668 2161 aa18.79■□□□□ 0.6
SNX1-210ENST00000560260 SMPD2O60906 423 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 SBK2P0C263 348 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 FAM157BP0CG42 384 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 NR4A1P22736 598 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 ANOS1P23352 680 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 ISL1P61371 349 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 ZNF91Q05481 1191 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 SMN1Q16637 294 aaKnown RBP18.78■□□□□ 0.6
SNX1-210ENST00000560260 MEDAGQ5VYS4 303 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 RFPL4BQ6ZWI9 263 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 OR4F15Q8NGB8 312 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 OR1J2Q8NGS2 313 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 CNIH3Q8TBE1 160 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 ATF6BQ99941 703 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 VCX3BQ9H321 246 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 CA10Q9NS85 328 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 AKAP6Q13023 2319 aa18.78■□□□□ 0.6
SNX1-210ENST00000560260 MPZL2O60487 215 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 TMCC2O75069 709 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 ALOX5APP20292 161 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 THBS4P35443 961 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 VHLP40337 213 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 ERVS71-1P61550 626 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 IL18R1Q13478 541 aa18.77■□□□□ 0.6
SNX1-210ENST00000560260 LAIR2Q6ISS4 152 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms