RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 GGTLC2Q14390 218 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 MLC1Q15049 377 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 EBPQ15125 230 aaKnown RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 COL5A1-AS1Q5SY13 56 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 YOD1Q5VVQ6 348 aaPredicted RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 RPUSD3Q6P087 351 aaKnown RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 TMPPEQ6ZT21 453 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 SLC25A26Q70HW3 274 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 GALNTL5Q7Z4T8 443 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 C17orf64Q86WR6 236 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 KDM8Q8N371 416 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 NUDT10Q8NFP7 164 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 OR1P1Q8NH06 330 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 ZNF417Q8TAU3 575 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 RNASE8Q8TDE3 154 aaKnown RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 OIT3Q8WWZ8 545 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 DIRC2Q96SL1 478 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 ELP3Q9H9T3 547 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 DNAJC4Q9NNZ3 241 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 SIRT3Q9NTG7 399 aaPredicted RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 AHSPQ9NZD4 102 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 SEMA5BQ9P283 1151 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 MYO16Q9Y6X6 1858 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 A0A0D9SEW6 157 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 A0A0U1RQV5 110 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 PRAMEF27A3QJZ7 478 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 F5H5T6 163 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 PLRG1O43660 514 aaKnown RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 RPP14O95059 124 aaKnown RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 SEC11BP0C7V7 166 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 PNLIPP16233 465 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 TEAD1P28347 426 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 ERVFRD-1P60508 538 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 AGTRAPQ6RW13 159 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 MED25Q71SY5 747 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 ZNF101Q8IZC7 436 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 TMEM18Q96B42 140 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 WDR34Q96EX3 536 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 PRAP1Q96NZ9 151 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 SPON2Q9BUD6 331 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 TMEM242Q9NWH2 141 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 USP36Q9P275 1121 aaKnown RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 ZNF346Q9UL40 294 aaKnown RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 MEMO1Q9Y316 297 aa11.23□□□□□ -0.61
USP3-203ENST00000538686 TIMM13Q9Y5L4 95 aaPredicted RBP11.23□□□□□ -0.61
USP3-203ENST00000538686 TGIF2-C20orf24A0A0A6YYL0 155 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.22□□□□□ -0.61
USP3-203ENST00000538686 MEIS3P1A6NDR6 274 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 H3BQ15 152 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 M0QYG6 137 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 CDC42EP2O14613 210 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 CA11O75493 328 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 PGFP49763 221 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 SLC35A1P78382 337 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 MAP2K5Q13163 448 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 CRMP1Q14194 572 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 TMEM241Q24JQ0 296 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 SLCO4C1Q6ZQN7 724 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 Q6ZVU0 165 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 GDF7Q7Z4P5 450 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 SLC35F2Q8IXU6 374 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 OR2L13Q8N349 312 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 OR4S1Q8NGB4 309 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 UBE2E3Q969T4 207 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 SNX22Q96L94 193 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 C5orf34Q96MH7 638 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 FAAP24Q9BTP7 215 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 ANGPTL4Q9BY76 406 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 MSL2Q9HCI7 577 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 CHRNA9Q9UGM1 479 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 ZNF223Q9UK11 482 aaPredicted RBP11.22□□□□□ -0.61
USP3-203ENST00000538686 PCDHB8Q9UN66 801 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 DYRK1BQ9Y463 629 aa11.22□□□□□ -0.61
USP3-203ENST00000538686 COL16A1Q07092 1604 aaPredicted RBP11.22□□□□□ -0.61
USP3-203ENST00000538686 TNS1Q9HBL0 1735 aaKnown RBP11.22□□□□□ -0.61
USP3-203ENST00000538686 LOC100289279A0A1B0GTE1 492 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 NKX6-3A6NJ46 265 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 NFKBIEO00221 500 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 RRP8O43159 456 aaKnown RBP11.21□□□□□ -0.61
USP3-203ENST00000538686 LILRB3O75022 631 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 TGFB1P01137 390 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 CTSHP09668 335 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 OR5H8P0DN80 308 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 OR13C7P0DN81 318 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 IL9P15248 144 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 TACR2P21452 398 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 ID4P47928 161 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 CAMLGP49069 296 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 RANP62826 216 aaKnown RBP11.21□□□□□ -0.61
USP3-203ENST00000538686 ZNF616Q08AN1 781 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 HSPB3Q12988 150 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 OR5I1Q13606 314 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 C16orf54Q6UWD8 224 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 SLC39A5Q6ZMH5 540 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.21□□□□□ -0.61
USP3-203ENST00000538686 SLC35E3Q7Z769 313 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 AGBL5Q8NDL9 886 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 OR51F2Q8NH61 342 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 CASTOR1Q8WTX7 329 aa11.21□□□□□ -0.61
USP3-203ENST00000538686 ANKRD9Q96BM1 317 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms