RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TMIGD2Q96BF3 282 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 AKR1E2Q96JD6 320 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 TTC25Q96NG3 672 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 ZFP3Q96NJ6 502 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 RIOK2Q9BVS4 552 aaKnown RBP2.88□□□□□ -1.95
CD44-235ENST00000532339 TTTY12Q9BZ98 90 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 EXO5Q9H790 373 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 KIR3DX1Q9H7L2 352 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 HEXA-AS1Q9H8Q6 139 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 JPT2Q9H910 190 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 ELL3Q9HB65 397 aaPredicted RBP2.88□□□□□ -1.95
CD44-235ENST00000532339 BEX1Q9HBH7 125 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 CISHQ9NSE2 258 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 C14orf105Q9NVL8 296 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 FAIMQ9NVQ4 179 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 SMPD3Q9NY59 655 aaPredicted RBP2.88□□□□□ -1.95
CD44-235ENST00000532339 UTP6Q9NYH9 597 aaKnown RBP2.88□□□□□ -1.95
CD44-235ENST00000532339 COX16Q9P0S2 106 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 SPRR3Q9UBC9 169 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 MAB21L2Q9Y586 359 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 WNK2Q9Y3S1 2297 aa2.88□□□□□ -1.95
CD44-235ENST00000532339 RNF213Q63HN8 5207 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 FREM3P0C091 2139 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 KIAA1549Q9HCM3 1950 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 PINLYPA6NC86 204 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 LRRIQ3A6PVS8 624 aaPredicted RBP2.87□□□□□ -1.95
CD44-235ENST00000532339 C2orf74A8MZ97 194 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 K7EQM0 130 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 PHOX2AO14813 284 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 MAGEB3O15480 346 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 ZSCAN12O43309 604 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 EFNA2O43921 213 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 REM1O75628 298 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 NUDT14O95848 222 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 HLA-DRAP01903 254 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 MT-ND1P03886 318 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 MELTFP08582 738 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 DUX4L4P0CJ87 422 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 HSD17B1P14061 328 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 NT5EP21589 574 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 PPP2R1BP30154 601 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 RGS4P49798 205 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 IL24Q13007 206 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 XRCC4Q13426 336 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 SELPLGQ14242 412 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 SLC10A1Q14973 349 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 CYTH1Q15438 398 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 CHI3L2Q15782 390 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 UBE2V2Q15819 145 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 ZIC1Q15915 447 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 BRMS1LQ5PSV4 323 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 REP15Q6BDI9 236 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 BLOC1S2Q6QNY1 142 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 SPESP1Q6UW49 350 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 RFLNAQ6ZTI6 216 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 DPY19L4Q7Z388 723 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 ANKRD37Q7Z713 158 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 TMEM110Q86TL2 294 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 CYP4Z2PQ8N1L4 340 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 KIR3DL3Q8N743 410 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 OR2M7Q8NG81 312 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 UCN3Q969E3 161 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 TADA1Q96BN2 335 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 DNAJA3Q96EY1 480 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 C1orf147Q96MC9 270 aaPredicted RBP2.87□□□□□ -1.95
CD44-235ENST00000532339 MCCC1Q96RQ3 725 aaPredicted RBP2.87□□□□□ -1.95
CD44-235ENST00000532339 ZNF607Q96SK3 696 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 COMMD4Q9H0A8 199 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 OR2AG1Q9H205 316 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 SRMSQ9H3Y6 488 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 RHOJQ9H4E5 214 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 GORASP2Q9H8Y8 452 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 ADAP2Q9NPF8 381 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 MEPEQ9NQ76 525 aaPredicted RBP2.87□□□□□ -1.95
CD44-235ENST00000532339 AGPAT3Q9NRZ7 376 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 EURLQ9NYK6 297 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 KIAA1257Q9ULG3 409 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 MRPS7Q9Y2R9 242 aaKnown RBP2.87□□□□□ -1.95
CD44-235ENST00000532339 SNX10Q9Y5X0 201 aa2.87□□□□□ -1.95
CD44-235ENST00000532339 C11orf98E9PRG8 122 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 CLDN34H7C241 214 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 BTN3A3O00478 584 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 RIPK2O43353 540 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 PPIHO43447 177 aaKnown RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 OR1F1O43749 312 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 TYROBPO43914 113 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 RAMP1O60894 148 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 BCAS1O75363 584 aaPredicted RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 RENP00797 406 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 POU2F1P14859 743 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 RPL4P36578 427 aaKnown RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 RPL34P49207 117 aaKnown RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 EFNA4P52798 201 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 UBE2HP62256 183 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 SNRPFP62306 86 aaKnown RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 SPIBQ01892 262 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 CYLC2Q14093 348 aaPredicted RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 RBMY1FQ15415 496 aaKnown RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 TPD52L1Q16890 204 aaPredicted RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 TMEM44Q2T9K0 475 aa2.86□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms