RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 RPL36A-HNRNPH2H7BZ11 118 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 ZNHIT1O43257 154 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 LRRTM2O43300 516 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 UQCRFS1P47985 274 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 NANOS3P60323 173 aaKnown RBP18.66■□□□□ 0.58
VPS28-212ENST00000530836 ACSM3Q53FZ2 586 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 P4HA3Q7Z4N8 544 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 GJC3Q8NFK1 279 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 APH1AQ96BI3 265 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 MMP27Q9H306 513 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 CALHM2Q9HA72 323 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 GPR35Q9HC97 309 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 CLCF1Q9UBD9 225 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 ASH2LQ9UBL3 628 aa18.66■□□□□ 0.58
VPS28-212ENST00000530836 CD8B2A6NJW9 211 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 J3QKU1 62 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 ARL6IP5O75915 188 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 ZFPL1O95159 310 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 CD8BP10966 210 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 RORCP51449 518 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 ZNF829Q3KNS6 432 aaPredicted RBP18.65■□□□□ 0.58
VPS28-212ENST00000530836 ZNF404Q494X3 552 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 OR7E24Q6IFN5 339 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 CORO6Q6QEF8 472 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 KLHL24Q6TFL4 600 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 ABHD12BQ7Z5M8 362 aaPredicted RBP18.65■□□□□ 0.58
VPS28-212ENST00000530836 MAP6Q96JE9 813 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 C4orf45Q96LM5 186 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 ZNF416Q9BWM5 594 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 TMEM38BQ9NVV0 291 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 R4GMQ9 66 aa18.65■□□□□ 0.58
VPS28-212ENST00000530836 POLEQ07864 2286 aa18.64■□□□□ 0.58
VPS28-212ENST00000530836 PYCARD-AS1I3L0S3 204 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 SLC19A2O60779 497 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 CDRT1O95170 752 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 MAPK3P27361 379 aaPredicted RBP18.64■□□□□ 0.57
VPS28-212ENST00000530836 RPS19P39019 145 aaKnown RBP18.64■□□□□ 0.57
VPS28-212ENST00000530836 MMP16P51512 607 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 ROR2Q01974 943 aaKnown RBP18.64■□□□□ 0.57
VPS28-212ENST00000530836 CEACAM19Q7Z692 300 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 ALKBH3Q96Q83 286 aaPredicted RBP18.64■□□□□ 0.57
VPS28-212ENST00000530836 FOXB1Q99853 325 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 PDCD1LG2Q9BQ51 273 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 CENPMQ9NSP4 180 aa18.64■□□□□ 0.57
VPS28-212ENST00000530836 OR4C45A6NMZ5 311 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 ZNF587BE7ETH6 402 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 TGM6O95932 706 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 CST2P09228 141 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 ABOP16442 354 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 MTNR1BP49286 362 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 GRB2P62993 217 aaKnown RBP18.63■□□□□ 0.57
VPS28-212ENST00000530836 ENDOGQ14249 297 aaKnown RBP18.63■□□□□ 0.57
VPS28-212ENST00000530836 EIF2S3LQ2VIR3 472 aaKnown RBP18.63■□□□□ 0.57
VPS28-212ENST00000530836 CEACAM16Q2WEN9 425 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 ZMAT1Q5H9K5 638 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 TSPO2Q5TGU0 170 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 SYT9Q86SS6 491 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 TPRA1Q86W33 373 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 ZNF100Q8IYN0 542 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 MCFD2Q8NI22 146 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 FAM57AQ8TBR7 257 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 TBC1D15Q8TC07 691 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 HSD17B8Q92506 261 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 WNT2BQ93097 391 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 SLC25A46Q96AG3 418 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 DCLRE1CQ96SD1 692 aaKnown RBP18.63■□□□□ 0.57
VPS28-212ENST00000530836 NXF2Q9GZY0 626 aaKnown RBP18.63■□□□□ 0.57
VPS28-212ENST00000530836 OSGIN2Q9Y236 505 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 ZNF879B4DU55 563 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 SS18L1O75177 396 aaPredicted RBP18.63■□□□□ 0.57
VPS28-212ENST00000530836 FARS2O95363 451 aaKnown RBP18.63■□□□□ 0.57
VPS28-212ENST00000530836 MYL9P24844 172 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 SDC2P34741 201 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 PCBD1P61457 104 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 RPS11P62280 158 aaKnown RBP eCLIP18.63■□□□□ 0.57
VPS28-212ENST00000530836 HIST1H3AP68431 136 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 HIST2H3PS2Q5TEC6 136 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 OR2A2Q6IF42 318 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 UNQ9370/PRO34162Q6UXP9 181 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 CFAP77Q6ZQR2 320 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 HIST2H3AQ71DI3 136 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 SPATC1Q76KD6 591 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 CATSPERDQ86XM0 798 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 ZNF676Q8N7Q3 588 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 MOB1AQ9H8S9 216 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 UPB1Q9UBR1 384 aa18.63■□□□□ 0.57
VPS28-212ENST00000530836 CASKO14936 926 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 SRSF10O75494 262 aaKnown RBP18.62■□□□□ 0.57
VPS28-212ENST00000530836 HSD11B1P28845 292 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 AGTR1P30556 359 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 PTGER4P35408 488 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 TAF13Q15543 124 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 MOGQ16653 247 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 WDR38Q5JTN6 314 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 PRSS35Q8N3Z0 413 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 OR10S1Q8NGN2 331 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 PRR7Q8TB68 274 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 ZNF837Q96EG3 531 aaPredicted RBP18.62■□□□□ 0.57
VPS28-212ENST00000530836 TRIB1Q96RU8 372 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 SLC7A10Q9NS82 523 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms