RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GTF2A1LQ9UNN4 478 aa18.47■□□□□ 0.55
VPS28-208ENST00000527797 IGF2RP11717 2491 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 MBD3L4A6NDZ8 208 aaPredicted RBP18.46■□□□□ 0.55
VPS28-208ENST00000527797 MBD3L3A6NE82 208 aaPredicted RBP18.46■□□□□ 0.55
VPS28-208ENST00000527797 MBD3L5A6NJ08 208 aaPredicted RBP18.46■□□□□ 0.55
VPS28-208ENST00000527797 TMEM212A6NML5 194 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 HOXD4P09016 255 aaPredicted RBP18.46■□□□□ 0.55
VPS28-208ENST00000527797 HSD11B1P28845 292 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 INSL4Q14641 139 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 DGUOKQ16854 277 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 ACSM3Q53FZ2 586 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 YIF1BQ5BJH7 314 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 WDR38Q5JTN6 314 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 C1orf185Q5T7R7 199 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 PRSS35Q8N3Z0 413 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 MBD3L2Q8NHZ7 208 aaPredicted RBP18.46■□□□□ 0.55
VPS28-208ENST00000527797 WACQ9BTA9 647 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 MALT1Q9UDY8 824 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 ANKRD11Q6UB99 2663 aaPredicted RBP18.46■□□□□ 0.55
VPS28-208ENST00000527797 NCOR2Q9Y618 2525 aa18.46■□□□□ 0.55
VPS28-208ENST00000527797 TMEM269A0A1B0GVZ9 245 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 OR4C45A6NMZ5 311 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 SRSF10O75494 262 aaKnown RBP18.45■□□□□ 0.54
VPS28-208ENST00000527797 PNPP00491 289 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 SH3BGRP55822 239 aaPredicted RBP18.45■□□□□ 0.54
VPS28-208ENST00000527797 PCBD1P61457 104 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 GRB2P62993 217 aaKnown RBP18.45■□□□□ 0.54
VPS28-208ENST00000527797 MFGE8Q08431 387 aaPredicted RBP18.45■□□□□ 0.54
VPS28-208ENST00000527797 SCRN3Q0VDG4 424 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 C9orf135Q5VTT2 229 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 ZNF627Q7L945 461 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 SLC16A14Q7RTX9 510 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 CEACAM19Q7Z692 300 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 SYT9Q86SS6 491 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 CATSPERDQ86XM0 798 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 ZNF676Q8N7Q3 588 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 CNEP1R1Q8N9A8 125 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 ASF1BQ9NVP2 202 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 CFAP47Q6ZTR5 3102 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 LOC110117498-PIK3R3F6TDL0 507 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 SC5DO75845 299 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 SFTPCP11686 197 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 KIR2DL2P43627 348 aaPredicted RBP18.45■□□□□ 0.54
VPS28-208ENST00000527797 KIR3DL2P43630 455 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 MMP16P51512 607 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 PER3P56645 1201 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 RPS11P62280 158 aaKnown RBP eCLIP18.45■□□□□ 0.54
VPS28-208ENST00000527797 CCDC92Q53HC0 331 aaPredicted RBP18.45■□□□□ 0.54
VPS28-208ENST00000527797 ELFN2Q5R3F8 820 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 RTL6Q6ICC9 239 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 PAMR1Q6UXH9 720 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 GFRALQ6UXV0 394 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 SKA3Q8IX90 412 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 OR13C5Q8NGS8 318 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 OR6K3Q8NGY3 331 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 ATF6BQ99941 703 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 DDX28Q9NUL7 540 aaKnown RBP18.45■□□□□ 0.54
VPS28-208ENST00000527797 SLC5A6Q9Y289 635 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 TIMM10BQ9Y5J6 103 aa18.45■□□□□ 0.54
VPS28-208ENST00000527797 DMXL2Q8TDJ6 3036 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 CACNA1AO00555 2505 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 PRRG2O14669 202 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 GATBO75879 557 aaKnown RBP18.44■□□□□ 0.54
VPS28-208ENST00000527797 MPGP29372 298 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 FOXG1P55316 489 aaPredicted RBP18.44■□□□□ 0.54
VPS28-208ENST00000527797 PRR30Q53SZ7 412 aaPredicted RBP18.44■□□□□ 0.54
VPS28-208ENST00000527797 TFAP2EQ6VUC0 442 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 SEM1Q6ZVN7 128 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 MED18Q9BUE0 208 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 PLEK2Q9NYT0 353 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 OR52A1Q9UKL2 312 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 SLC22A13Q9Y226 551 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 FAM215AQ9Y5M1 114 aa18.44■□□□□ 0.54
VPS28-208ENST00000527797 SGCEO43556 437 aa18.43■□□□□ 0.54
VPS28-208ENST00000527797 CDRT1O95170 752 aa18.43■□□□□ 0.54
VPS28-208ENST00000527797 RPS19P39019 145 aaKnown RBP18.43■□□□□ 0.54
VPS28-208ENST00000527797 LSAMPQ13449 338 aa18.43■□□□□ 0.54
VPS28-208ENST00000527797 RAB35Q15286 201 aa18.43■□□□□ 0.54
VPS28-208ENST00000527797 EIF2S3LQ2VIR3 472 aaKnown RBP18.43■□□□□ 0.54
VPS28-208ENST00000527797 IL17RDQ8NFM7 739 aa18.43■□□□□ 0.54
VPS28-208ENST00000527797 G6PC2Q9NQR9 355 aa18.43■□□□□ 0.54
VPS28-208ENST00000527797 FAM206AQ9NX38 181 aa18.43■□□□□ 0.54
VPS28-208ENST00000527797 DVL2O14641 736 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 IL1AP01583 271 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 IL2RAP01589 272 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 CRHP06850 196 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 ZNF32P17041 273 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 CTSSP25774 331 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 PRKXP51817 358 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 PSMA6P60900 246 aaKnown RBP18.42■□□□□ 0.54
VPS28-208ENST00000527797 ODF4Q2M2E3 257 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 ZMAT1Q5H9K5 638 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 UNQ9370/PRO34162Q6UXP9 181 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 RGP1Q92546 391 aaPredicted RBP18.42■□□□□ 0.54
VPS28-208ENST00000527797 PHYHIPQ92561 330 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 PPP1R14AQ96A00 147 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 KCNJ15Q99712 375 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 HDHD2Q9H0R4 259 aa18.42■□□□□ 0.54
VPS28-208ENST00000527797 TP63Q9H3D4 680 aaPredicted RBP18.42■□□□□ 0.54
VPS28-208ENST00000527797 CCDC59Q9P031 241 aaKnown RBP18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms