RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 AHDC1Q5TGY3 1603 aaPredicted RBP2.2□□□□□ -2.06
CD44-215ENST00000525241 BRWD3Q6RI45 1802 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 NUP214P35658 2090 aaPredicted RBP2.19□□□□□ -2.06
CD44-215ENST00000525241 OR6C74A6NCV1 312 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 H0YJW9 148 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 L7N2F9 121 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 AIM2O14862 343 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 CLOCKO15516 846 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 CTSLP07711 333 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 OR8U9P0C7N5 309 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 RNASE2P10153 161 aaKnown RBP2.19□□□□□ -2.06
CD44-215ENST00000525241 ZNF24P17028 368 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 RAB3AP20336 220 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 HCAR3P49019 387 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 VSX2P58304 361 aaPredicted RBP2.19□□□□□ -2.06
CD44-215ENST00000525241 ZNF616Q08AN1 781 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 CHRNA6Q15825 494 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 SOHLH1Q5JUK2 328 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 PPM1LQ5SGD2 360 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 NPWQ8N729 165 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 OR56B2PQ8NGI1 322 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 LILRB4Q8NHJ6 448 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 TPD52L3Q96J77 140 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 DNAJC1Q96KC8 554 aaKnown RBP2.19□□□□□ -2.06
CD44-215ENST00000525241 LZTS2Q9BRK4 669 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 CENPKQ9BS16 269 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 SAMSN1Q9NSI8 373 aaKnown RBP2.19□□□□□ -2.06
CD44-215ENST00000525241 HYOU1Q9Y4L1 999 aa2.19□□□□□ -2.06
CD44-215ENST00000525241 COL27A1Q8IZC6 1860 aaPredicted RBP2.18□□□□□ -2.06
CD44-215ENST00000525241 HEATR9A2RTY3 570 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 FAM47DPA6NHR8 397 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 DNASE2O00115 360 aaPredicted RBP2.18□□□□□ -2.06
CD44-215ENST00000525241 FKBP6O75344 327 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 REM1O75628 298 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 CDRT1O95170 752 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 H6PDO95479 791 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 IL4P05112 153 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 EIF4EP06730 217 aaKnown RBP2.18□□□□□ -2.06
CD44-215ENST00000525241 ATF6P18850 670 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 GGT1P19440 569 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 P2RX1P51575 399 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 PRRX1P54821 245 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 CDH6P55285 790 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 PRR3P79522 188 aaKnown RBP2.18□□□□□ -2.06
CD44-215ENST00000525241 MRPL23Q16540 153 aaKnown RBP2.18□□□□□ -2.06
CD44-215ENST00000525241 XKR7Q5GH72 579 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 UBE2UQ5VVX9 321 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 GPR107Q5VW38 600 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 IQCKQ8N0W5 287 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 MICU1Q9BPX6 476 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 EDA2RQ9HAV5 297 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 SLC38A10Q9HBR0 1119 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 HRASLS2Q9NWW9 162 aa2.18□□□□□ -2.06
CD44-215ENST00000525241 TRMT112Q9UI30 125 aaKnown RBP2.18□□□□□ -2.06
CD44-215ENST00000525241 SYNJ2BP-COX16A0A087WUM0 186 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 XKRY2A2RUG3 117 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 C5orf63A6NC05 138 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 SMCO2A6NFE2 343 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 ZNF716A6NP11 495 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 LYRM9A8MSI8 78 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 SMKR1H3BMG3 65 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 OR2J3O76001 311 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 ZNF735P0CB33 412 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 CDKN2DP55273 166 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 STXBP1P61764 594 aaKnown RBP2.17□□□□□ -2.06
CD44-215ENST00000525241 PPP1CBP62140 327 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 PIGHQ14442 188 aaPredicted RBP2.17□□□□□ -2.06
CD44-215ENST00000525241 C9orf135Q5VTT2 229 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 REEP3Q6NUK4 255 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 UNQ9165/PRO28630Q6UXU0 137 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 MBOAT1Q6ZNC8 495 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 SNX20Q7Z614 316 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 CMTM1Q8IZ96 169 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 GTPBP8Q8N3Z3 284 aaPredicted RBP2.17□□□□□ -2.06
CD44-215ENST00000525241 COX18Q8N8Q8 333 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 C11orf72Q8NBR9 251 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 LRRC29Q8WV35 223 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 RTN4IP1Q8WWV3 396 aaPredicted RBP2.17□□□□□ -2.06
CD44-215ENST00000525241 ELMO1Q92556 727 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 SLC25A46Q96AG3 418 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 COL21A1Q96P44 957 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 HSD17B10Q99714 261 aaKnown RBP2.17□□□□□ -2.06
CD44-215ENST00000525241 SULT4A1Q9BR01 284 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 FGF23Q9GZV9 251 aaPredicted RBP2.17□□□□□ -2.06
CD44-215ENST00000525241 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP2.17□□□□□ -2.06
CD44-215ENST00000525241 GPR179Q6PRD1 2367 aa2.17□□□□□ -2.06
CD44-215ENST00000525241 RDH16O75452 317 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 CLDN11O75508 207 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 SERPINE2P07093 398 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 ZNF688P0C7X2 276 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 TROVE2P10155 538 aaKnown RBP eCLIP2.16□□□□□ -2.06
CD44-215ENST00000525241 ERGP11308 486 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 SLC1A1P43005 524 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 PRMT2P55345 433 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 SYNJ2BPP57105 145 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 CRADDP78560 199 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 SP4Q02446 784 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 MPV17L2Q567V2 206 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 TCEAL5Q5H9L2 206 aa2.16□□□□□ -2.06
CD44-215ENST00000525241 RAET1LQ5VY80 246 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms