RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 NXPH1P58417 271 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 RNF4P78317 190 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 SORDQ00796 357 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 BAMBIQ13145 260 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 SQSTM1Q13501 440 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 GK2Q14410 553 aaPredicted RBP9.91□□□□□ -0.82
HDAC9-228ENST00000524023 NR0B2Q15466 257 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 LY6G6FQ5SQ64 297 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 C1orf100Q5SVJ3 147 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 TMEM244Q5VVB8 128 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 DNM1P34Q6PK57 102 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 ZNF704Q6ZNC4 412 aaPredicted RBP9.91□□□□□ -0.82
HDAC9-228ENST00000524023 C16orf47Q6ZP98 133 aaPredicted RBP9.91□□□□□ -0.82
HDAC9-228ENST00000524023 MISPQ8IVT2 679 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.91□□□□□ -0.82
HDAC9-228ENST00000524023 PLPP5Q8NEB5 264 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 OR6S1Q8NH40 331 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 PTX4Q96A99 478 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 ARL5BQ96KC2 179 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 KCNK17Q96T54 332 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 ZMAT3Q9HA38 289 aaKnown RBP9.91□□□□□ -0.82
HDAC9-228ENST00000524023 MYOZ1Q9NP98 299 aaPredicted RBP9.91□□□□□ -0.82
HDAC9-228ENST00000524023 COQ3Q9NZJ6 369 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 CTSFQ9UBX1 484 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 NPIPA1Q9UND3 350 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 RHBDD3Q9Y3P4 386 aa9.91□□□□□ -0.82
HDAC9-228ENST00000524023 IGKV1D-43A0A0B4J1Z2 117 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 IGHV3-20A0A0C4DH32 117 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 C2orf72A6NCS6 295 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 ANKUB1A6NFN9 424 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 RFPL4AA6NLU0 287 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 POM121CA8CG34 1229 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 ZNF736B4DX44 427 aaPredicted RBP9.9□□□□□ -0.82
HDAC9-228ENST00000524023 RFPL4AL1F8VTS6 287 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 DUX1O43812 170 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 AQP8O94778 261 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 RPA2P15927 270 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 DAP3P51398 398 aaKnown RBP9.9□□□□□ -0.82
HDAC9-228ENST00000524023 FOXL2P58012 376 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 OR7A5Q15622 319 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 ATPAF1Q5TC12 328 aaPredicted RBP9.9□□□□□ -0.82
HDAC9-228ENST00000524023 DEGS2Q6QHC5 323 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 SHISA6Q6ZSJ9 500 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 H1FNTQ75WM6 255 aaPredicted RBP9.9□□□□□ -0.82
HDAC9-228ENST00000524023 PRSS42Q7Z5A4 293 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 TMED4Q7Z7H5 227 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 OR4D6Q8NGJ1 314 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 ST8SIA1Q92185 356 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 EDAQ92838 391 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 LINC00052Q96N35 136 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 MFFQ9GZY8 342 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 ZNF107Q9UII5 783 aaPredicted RBP9.9□□□□□ -0.82
HDAC9-228ENST00000524023 KLK13Q9UKR3 277 aa9.9□□□□□ -0.82
HDAC9-228ENST00000524023 TRAV14DV4A0A0A6YYC5 116 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 TMEM235A6NFC5 223 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 P2RY10O00398 339 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 NUDT21O43809 227 aaKnown RBP9.9□□□□□ -0.83
HDAC9-228ENST00000524023 PIAS2O75928 621 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 UBCP0CG48 685 aaKnown RBP9.9□□□□□ -0.83
HDAC9-228ENST00000524023 ZNF28P17035 718 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 MPGP29372 298 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 UBXN2BQ14CS0 331 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 ZNF660Q6AZW8 331 aaPredicted RBP9.9□□□□□ -0.83
HDAC9-228ENST00000524023 BPIFB2Q8N4F0 458 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 NKAIN3Q8N8D7 197 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 STEAP2Q8NFT2 490 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 OR6K3Q8NGY3 331 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 MFSD8Q8NHS3 518 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 ZNF501Q96CX3 271 aaPredicted RBP9.9□□□□□ -0.83
HDAC9-228ENST00000524023 EDEM2Q9BV94 578 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 TTYH1Q9H313 450 aaPredicted RBP9.9□□□□□ -0.83
HDAC9-228ENST00000524023 SEMA5BQ9P283 1151 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 SUSD2Q9UGT4 822 aa9.9□□□□□ -0.83
HDAC9-228ENST00000524023 GDF2Q9UK05 429 aaPredicted RBP9.9□□□□□ -0.83
HDAC9-228ENST00000524023 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 ZNF354AO60765 605 aaPredicted RBP9.89□□□□□ -0.83
HDAC9-228ENST00000524023 H2BFMP0C1H6 154 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 RAB6AP20340 208 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 APOBEC1P41238 236 aaKnown RBP9.89□□□□□ -0.83
HDAC9-228ENST00000524023 FBXW4P57775 412 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 POU3F1Q03052 451 aaPredicted RBP9.89□□□□□ -0.83
HDAC9-228ENST00000524023 DHRS2Q13268 280 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 CLVS2Q5SYC1 327 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 CORO6Q6QEF8 472 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 SLC51BQ86UW2 128 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.89□□□□□ -0.83
HDAC9-228ENST00000524023 SPERTQ8NA61 448 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 ACBD4Q8NC06 268 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 CADM4Q8NFZ8 388 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 OR1J2Q8NGS2 313 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 OR13C8Q8NGS7 320 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 RNF133Q8WVZ7 376 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 FOXRED1Q96CU9 486 aaPredicted RBP9.89□□□□□ -0.83
HDAC9-228ENST00000524023 DMRTA2Q96SC8 542 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 SLC6A7Q99884 636 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 B3GNT4Q9C0J1 378 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 DUSP15Q9H1R2 295 aaPredicted RBP9.89□□□□□ -0.83
HDAC9-228ENST00000524023 CENPMQ9NSP4 180 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 MED29Q9NX70 200 aa9.89□□□□□ -0.83
HDAC9-228ENST00000524023 PFDN2Q9UHV9 154 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms