RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 FCF1Q9Y324 198 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ETV7Q9Y603 341 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 KIAA1671Q9BY89 1806 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 TRAV27A0A087WT01 109 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 A0A1B0GVT2 93 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 H3BQ15 152 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 PEX12O00623 359 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 CYB5R3P00387 301 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 F11P03951 625 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 HKR1P10072 659 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 SERPINA2P20848 420 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 PTTG1IPP53801 180 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 LEG1Q6P5S2 330 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ANKRD16Q6P6B7 361 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF573Q86YE8 665 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 ACOT4Q8N9L9 421 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 OR9A1PQ8NGU1 263 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 THAP3Q8WTV1 239 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 OIT3Q8WWZ8 545 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 FGF13Q92913 245 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 GPR173Q9NS66 373 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 HSF4Q9ULV5 492 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 KCNE3Q9Y6H6 103 aa10.89□□□□□ -0.67
LIMCH1-213ENST00000511496 DNAH12Q6ZR08 3092 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 DOCK4Q8N1I0 1966 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 FITM1A5D6W6 292 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 SYT7O43581 403 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 RHOCP08134 193 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 NANOS3P60323 173 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 RHOAP61586 193 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC9A3R2Q15599 337 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 RPUSD3Q6P087 351 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 ULK3Q6PHR2 472 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 UNQ9370/PRO34162Q6UXP9 181 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 PFN4Q8NHR9 129 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 SHDQ96IW2 340 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 MFRPQ9BY79 579 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC5A7Q9GZV3 580 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 SIDT1Q9NXL6 827 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC2A8Q9NY64 477 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 PITPNC1Q9UKF7 332 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 PHIPQ8WWQ0 1821 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 A6NCN8 305 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 H0YL77 283 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 M0QZK8 103 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 BNIP3LO60238 219 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 GGCTO75223 188 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 SRSF5Q13243 272 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 RAB32Q13637 225 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 AADACL3Q5VUY0 350 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 DNM1P46Q6ZS02 220 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF679Q8IYX0 411 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 C2orf73Q8N5S3 287 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 MAGEH1Q9H213 219 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 V9GYS6 101 aa10.88□□□□□ -0.67
LIMCH1-213ENST00000511496 TRAV8-7A0A075B6U6 113 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 C20orf202A1L168 122 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 BHLHE40O14503 412 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 FCMRO60667 390 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 LEFTY1O75610 366 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 THY1P04216 161 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 EPHA1P21709 976 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC6A9P48067 706 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 DLK1P80370 383 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 B4GALNT1Q00973 533 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 KCNMB1Q16558 191 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 KIRREL2Q6UWL6 708 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 SLC25A42Q86VD7 318 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF101Q8IZC7 436 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 NKD1Q969G9 470 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 WFIKKN1Q96NZ8 548 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 VPS25Q9BRG1 176 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 METTL8Q9H825 291 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 DMRT3Q9NQL9 472 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 C20orf141Q9NUB4 165 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 PLXNA4Q9HCM2 1894 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 A0A1B0GTH9 108 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 OR2AG2A6NM03 316 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 FAM171A2A8MVW0 826 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 CDC14BO60729 498 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 IGHEP01854 428 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 ZNF888P0CJ79 500 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 PNLIPP16233 465 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 MAKP20794 623 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 POLR2HP52434 150 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 CLDN2P57739 230 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 LEMD1Q68G75 181 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 OR6K6Q8NGW6 343 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 OR4K13Q8NH42 304 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 ALKBH3Q96Q83 286 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 LGR4Q9BXB1 951 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 DPEP2Q9H4A9 486 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 CMC2Q9NRP2 79 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 SIRT3Q9NTG7 399 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 KIF26AQ9ULI4 1882 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 SCN5AQ14524 2016 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 ALPK2Q86TB3 2170 aa10.87□□□□□ -0.67
LIMCH1-213ENST00000511496 IFNL4K9M1U5 179 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms