RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 DUSP15Q9H1R2 295 aaPredicted RBP14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RDH8Q9NYR8 311 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TAS2R4Q9NYW5 299 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 LRP12Q9Y561 859 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FER1L5A0AVI2 2057 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GOSR2O14653 212 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ARPC5O15511 151 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PTPRZ1P23471 2315 aaPredicted RBP14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 S100A11P31949 105 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 EIF2B1Q14232 305 aaKnown RBP14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MELKQ14680 651 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 HLA-DQA1Q5Y7H0 255 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RGS7BPQ6MZT1 257 aaPredicted RBP14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GABRG1Q8N1C3 465 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZNF441Q8N8Z8 693 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZBTB44Q8NCP5 570 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR11A1Q9GZK7 315 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GLS2Q9UI32 602 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PRELID3BQ9Y3B1 194 aa14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MRPS18BQ9Y676 258 aaKnown RBP14.42□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OTOGLQ3ZCN5 2332 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 hCG_1807616A0A1W2PRN6 198 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 A8MVM7 634 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 F5H5P2 479 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ITGB2P05107 769 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 HLA-DOBP13765 273 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RAB3AP20336 220 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 RIDAP52758 137 aaKnown RBP14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PNLIPRP2P54317 469 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SSBP1Q04837 148 aaKnown RBP14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TCEAL6Q6IPX3 200 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 KCTD18Q6PI47 426 aaPredicted RBP14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TMEM205Q6UW68 189 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR52H1Q8NGJ2 320 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR1L3Q8NH93 324 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 TCEAL3Q969E4 200 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZDHHC12Q96GR4 267 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZNF587Q96SQ5 575 aaPredicted RBP14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 C1QTNF6Q9BXI9 259 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 C1orf198Q9H425 327 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 COA3Q9Y2R0 106 aaPredicted RBP14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 KCNMB2Q9Y691 235 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FREM2Q5SZK8 3169 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MELTFP08582 738 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 NMBP08949 121 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FSTP19883 344 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 IL11P20809 199 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CD38P28907 300 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GLT8D1Q68CQ7 371 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OGFOD3Q6PK18 319 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 WDFY1Q8IWB7 410 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 PRSS58Q8IYP2 241 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR51A2Q8NGJ7 313 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MVB12AQ96EY5 273 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 SLC41A2Q96JW4 573 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CXorf58Q96LI9 332 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 LRFN3Q9BTN0 628 aa14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ALX4Q9H161 411 aaPredicted RBP14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CGGBP1Q9UFW8 167 aaPredicted RBP14.41□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MFSD2BA6NFX1 497 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 LDLRAD4O15165 306 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 DOK2O60496 412 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GABRA1P14867 456 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 BTF3P20290 206 aaKnown RBP14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 HTR2CP28335 458 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 CALCRP30988 508 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 ZNF273Q14593 569 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 NSDHLQ15738 373 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 MPPED2Q15777 294 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 GLYATL3Q5SZD4 288 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 B3GNTL1Q67FW5 361 aaPredicted RBP14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR1N1Q8NGS0 311 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 OR52N5Q8NH56 324 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 IER2Q9BTL4 223 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 EXO5Q9H790 373 aa14.4□□□□□ -0.1
MSH5-SAPCD1-208ENST00000498473 FTCDNL1E5RQL4 147 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SULT1C2O00338 296 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 HOXA1P49639 335 aaPredicted RBP14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CFHR1Q03591 330 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 HYAL4Q2M3T9 481 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GRINAQ7Z429 371 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 WDR5BQ86VZ2 330 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 KDM8Q8N371 416 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 TMEM229BQ8NBD8 167 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 DAZLQ92904 295 aaKnown RBP14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SLC25A44Q96H78 314 aaPredicted RBP14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 NPAS1Q99742 590 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 G6PC2Q9NQR9 355 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 MED9Q9NWA0 146 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 SDHAF2Q9NX18 166 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 FXYD6-FXYD2A0A087WZ82 144 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PPP3CBP16298 524 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CD27P26842 260 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 OR1D5P58170 312 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 C14orf28Q4W4Y0 310 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 PMS2CLQ68D20 193 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 ALKAL2Q6UX46 152 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 LYPD6Q86Y78 171 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 CDH26Q8IXH8 852 aa14.39□□□□□ -0.11
MSH5-SAPCD1-208ENST00000498473 GALNT16Q8N428 558 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms