RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZNF708P17019 499 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ROM1Q03395 351 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 SSX1Q16384 188 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 TBC1D28Q2M2D7 210 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 CEACAM16Q2WEN9 425 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 TRMT10AQ8TBZ6 339 aaKnown RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 RNF133Q8WVZ7 376 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 PSMF1Q92530 271 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ZNF845Q96IR2 970 aaPredicted RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 EXTL2Q9UBQ6 330 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 MRPS7Q9Y2R9 242 aaKnown RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 LRP12Q9Y561 859 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FLVCR1Q9Y5Y0 555 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 TNRC6BQ9UPQ9 1833 aaKnown RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 SPTBP11277 2137 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 GGT3PA6NGU5 568 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 CRYBB2P43320 205 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 UBE2NLQ5JXB2 153 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ZNF362Q5T0B9 420 aaPredicted RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 ABLIM2Q6H8Q1 611 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 SFXN4Q6P4A7 337 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FAM46BQ96A09 425 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 TMEM106AQ96A25 262 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 CST11Q9H112 138 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 DLL3Q9NYJ7 618 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 LHX6Q9UPM6 363 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 RALGAPA1Q6GYQ0 2036 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ADAMTS9Q9P2N4 1935 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 M0R135 149 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 CRHP06850 196 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 HOXB1P14653 301 aaPredicted RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 TGM1P22735 817 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 BDKRB2P30411 391 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FMODQ06828 376 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 INPP5JQ15735 1006 aaPredicted RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 KCNMB1Q16558 191 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 RTL6Q6ICC9 239 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 SETD6Q8TBK2 473 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 WNT2BQ93097 391 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 C10orf35Q96D05 121 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 FAM122AQ96E09 287 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 ZNF799Q96GE5 643 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 SCNM1Q9BWG6 230 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 NOX4Q9NPH5 578 aa7.44□□□□□ -1.22
USP54-215ENST00000497106 TMA7Q9Y2S6 64 aaKnown RBP7.44□□□□□ -1.22
USP54-215ENST00000497106 ARID1BQ8NFD5 2236 aaPredicted RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 LOC107986453A0A1B0GWG9 222 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 CSTBP04080 98 aaKnown RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 CPN1P15169 458 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 SRMP19623 302 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 FABP5Q01469 135 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 GPR176Q14439 515 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 LINC01590Q5TEZ4 76 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 FGD2Q7Z6J4 655 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 ZNF101Q8IZC7 436 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 OR6M1Q8NGM8 313 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 TBC1D15Q8TC07 691 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 KISS1RQ969F8 398 aaPredicted RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 MUCL1Q96DR8 90 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 PBOV1Q9GZY1 135 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 SLC22A4Q9H015 551 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 ATPIF1Q9UII2 106 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 GRIP1Q9Y3R0 1128 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 ANKRD61A6NGH8 418 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 TERTO14746 1132 aaKnown RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 SMAD9O15198 467 aaKnown RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 TFP02787 698 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 MAS1P04201 325 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 CCNOP22674 350 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 BMXP51813 675 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 CLDN20P56880 219 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 ATP1A1-AS1Q5TC04 95 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 RAB12Q6IQ22 244 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 LINGO2Q7L985 606 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 OR1F12Q8NHA8 337 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 OR14A2Q96R54 314 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 CRLF2Q9HC73 371 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 MRM2Q9UI43 246 aaKnown RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 ITGA5P08648 1049 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 IL11P20809 199 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 CEP78Q5JTW2 689 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 C6orf183Q5T699 404 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 FAM27BQ5VT28 67 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 RSBN1Q5VWQ0 802 aaPredicted RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 FDX2Q6P4F2 183 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 C3P1Q6ZMU1 363 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 SLC22A24Q8N4F4 322 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 ZPLD1Q8TCW7 415 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 FAM71F1Q96KD3 344 aaPredicted RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 MESP1Q9BRJ9 268 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 MFRPQ9BY79 579 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 GPR35Q9HC97 309 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 TMEM38BQ9NVV0 291 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 TAS2R8Q9NYW2 309 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 ASCC3Q8N3C0 2202 aaKnown RBP7.43□□□□□ -1.22
USP54-215ENST00000497106 ANKRD30BLA7E2S9 258 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 HLA-DOBP13765 273 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 OPRL1P41146 370 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 HCCSP53701 268 aa7.43□□□□□ -1.22
USP54-215ENST00000497106 RIPPLY1Q0D2K3 151 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms