RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 SLC7A5P2Q9GIP4 190 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 OR2AG1Q9H205 316 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 NCOR1P1Q9H4R4 102 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 RPP21Q9H633 154 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 AUNIPQ9H7T9 357 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 NOX3Q9HBY0 568 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 LYRM4Q9HD34 91 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 KCNJ16Q9NPI9 418 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 GPATCH2LQ9NWQ4 482 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 DUX4Q9UBX2 424 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 OR12D3Q9UGF7 316 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 CAB39Q9Y376 341 aaPredicted RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 GOLT1BQ9Y3E0 138 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 YTHDF2Q9Y5A9 579 aaKnown RBP1.36□□□□□ -2.19
CPSF3-205ENST00000489629 MAPK8IP3Q9UPT6 1336 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 C2orf16Q68DN1 1984 aa1.36□□□□□ -2.19
CPSF3-205ENST00000489629 IGHV5-51A0A0C4DH38 117 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 A0A1B0GVX0 72 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 SMCO3A2RU48 225 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 LRRIQ4A6NIV6 560 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 SUPT3HB4E1H0 165 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 H0YIV9 168 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 AIM2O14862 343 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 SIVA1O15304 175 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 RAB3DO95716 219 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 CD160O95971 181 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 RHOXF2BP0C7M4 288 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 STAG3L3P0CL85 134 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 PRPS2P11908 318 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF250P15622 560 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 GSTM3P21266 225 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 GTF2E2P29084 291 aaKnown RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 OTX1P32242 354 aaPredicted RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 CDKN2BP42772 138 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 UQCRFS1P47985 274 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 RAB9AP51151 201 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 CLDN8P56748 225 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 C21orf59P57076 290 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 RGS8P57771 180 aaPredicted RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 TWF1Q12792 350 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 HSDL1Q3SXM5 330 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 HIKESHIQ53FT3 197 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 PIP5KL1Q5T9C9 394 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 C9orf135Q5VTT2 229 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 DNAJC24Q6P3W2 148 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 EIF3MQ7L2H7 374 aaKnown RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 LUZP2Q86TE4 346 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 OAFQ86UD1 273 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 LRP11Q86VZ4 500 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 CBLN2Q8IUK8 224 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 GABRG1Q8N1C3 465 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 OR4C5Q8NGB2 326 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 OR56A4Q8NGH8 313 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 NUBPLQ8TB37 319 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 TSEN15Q8WW01 171 aaKnown RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 SEH1LQ96EE3 360 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF681Q96N22 645 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 BCL7BQ9BQE9 202 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 MTG1Q9BT17 334 aaPredicted RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ANKRD60Q9BZ19 345 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 UCK2Q9BZX2 261 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 PARP12Q9H0J9 701 aaKnown RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ELOVL6Q9H5J4 265 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ZNF430Q9H8G1 570 aaPredicted RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 CYP3A43Q9HB55 503 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 TMEM165Q9HC07 324 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 MRPS30Q9NP92 439 aaKnown RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ACP6Q9NPH0 428 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ISYNA1Q9NPH2 558 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 RPRD1BQ9NQG5 326 aaKnown RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 AGPAT4Q9NRZ5 378 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 UXTQ9UBK9 157 aaPredicted RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 LGALS13Q9UHV8 139 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 PSME2Q9UL46 239 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 SLC17A4Q9Y2C5 497 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 RHBDD3Q9Y3P4 386 aa1.35□□□□□ -2.19
CPSF3-205ENST00000489629 TNKS1BP1Q9C0C2 1729 aaKnown RBP1.35□□□□□ -2.19
CPSF3-205ENST00000489629 ITGB4P16144 1822 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 IGLV1-36A0A0B4J1U3 117 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 IGHV5-10-1A0A0J9YXX1 117 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 A0A1B0GTQ1 180 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 NCBP2LA6PVI3 153 aaKnown RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 GOLGA8TH3BQL2 631 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 BOLA2-SMG1P6H3BVE0 249 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SIRPB1O00241 398 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 NDUFAB1O14561 156 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SLC9A3R1O14745 358 aaPredicted RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 ZBTB5O15062 677 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CASC3O15234 703 aaKnown RBP1.34□□□□□ -2.19
CPSF3-205ENST00000489629 ENTPD5O75356 428 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CLDN11O75508 207 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 RP2O75695 350 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 GABARAPO95166 117 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SCELO95171 688 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CTDNEP1O95476 244 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 BCHEP06276 602 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 IGKV4-1P06312 121 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 SERPINE2P07093 398 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 CISD3P0C7P0 127 aa1.34□□□□□ -2.19
CPSF3-205ENST00000489629 IGHV1-8P0DP01 117 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms