RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ATP6AP1Q15904 470 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 CLEC12BQ2HXU8 276 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 ZNF774Q6NX45 483 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 ZNF627Q7L945 461 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 FAM122BQ7Z309 247 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 ERI1Q8IV48 349 aaKnown RBP6.96□□□□□ -1.3
USP40-216ENST00000485943 NPEPL1Q8NDH3 523 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 OR9Q1Q8NGQ5 310 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 EME1Q96AY2 570 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 BOD1Q96IK1 185 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 SNX18Q96RF0 628 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 NIPSNAP1Q9BPW8 284 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 RBM4BQ9BQ04 359 aaKnown RBP6.96□□□□□ -1.3
USP40-216ENST00000485943 RBM4Q9BWF3 364 aaKnown RBP6.96□□□□□ -1.3
USP40-216ENST00000485943 ZNF416Q9BWM5 594 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 HCAR1Q9BXC0 346 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 RACGAP1Q9H0H5 632 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 HDHD2Q9H0R4 259 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 VCXQ9H320 206 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 ZNF442Q9H7R0 627 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 SP140LQ9H930 580 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 CENPMQ9NSP4 180 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 IL20Q9NYY1 176 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 TVP23BQ9NYZ1 205 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 CRNNQ9UBG3 495 aaPredicted RBP6.96□□□□□ -1.3
USP40-216ENST00000485943 KCNG2Q9UJ96 466 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 FZR1Q9UM11 496 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 B9D1Q9UPM9 204 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 CADP27708 2225 aa6.96□□□□□ -1.3
USP40-216ENST00000485943 ABCA12Q86UK0 2595 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 UNC79Q9P2D8 2635 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 RGS13O14921 159 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 TBX1O43435 398 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 SYNGR3O43761 229 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 IGLV1-44P01699 117 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 APOC1P02654 83 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 SOD3P08294 240 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ZNF14P17017 642 aaPredicted RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 FUT4P22083 530 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 CALCRP30988 508 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 PYCR1P32322 319 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 THBS4P35443 961 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 GGT2P36268 569 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ENTPD1P49961 510 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 PDLIM4P50479 330 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 UCP2P55851 309 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 CDC42P60953 191 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 PPP1CBP62140 327 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ESRRGP62508 458 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 PSG4Q00888 419 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ECH1Q13011 328 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 HIST3H3Q16695 136 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ALKBH6Q3KRA9 238 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 SPATA46Q5T0L3 261 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 PTCHD4Q6ZW05 846 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 SHFQ7M4L6 423 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 TSEN54Q7Z6J9 526 aaKnown RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 PEG10Q86TG7 708 aaKnown RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 COMMD2Q86X83 199 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 LINC00346Q8IVM7 164 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 LNX2Q8N448 690 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 IQCF1Q8N6M8 205 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ZNF283Q8N7M2 679 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 SLC37A3Q8NCC5 494 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ZNF540Q8NDQ6 660 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 OR51L1Q8NGJ5 315 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 IPCEF1Q8WWN9 437 aaPredicted RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 NEU4Q8WWR8 484 aaPredicted RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 WFDC12Q8WWY7 111 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 LRTOMTQ8WZ04 291 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 FAM168AQ92567 244 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 CENPNQ96H22 339 aaPredicted RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 C4orf45Q96LM5 186 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 TSSK2Q96PF2 358 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 INTS14Q96SY0 518 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 GPA33Q99795 319 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ATF6BQ99941 703 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 PIMREGQ9BSJ6 248 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 C9orf16Q9BUW7 83 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 TRAF4Q9BUZ4 470 aaPredicted RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 OSBPL10Q9BXB5 764 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 EGLN1Q9GZT9 426 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 MYOZ1Q9NP98 299 aaPredicted RBP6.95□□□□□ -1.3
USP40-216ENST00000485943 TAAR3PQ9P1P4 343 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 PCDHB10Q9UN67 800 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 NAV2Q8IVL1 2488 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 ROS1P08922 2347 aa6.95□□□□□ -1.3
USP40-216ENST00000485943 SPG11Q96JI7 2443 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 IGKV1D-43A0A0B4J1Z2 117 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 A0A1W2PPR1 153 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 ERICH4A6NGS2 130 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 TVP23AA6NH52 213 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 CYSRT1A8MQ03 144 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 MPZL1O95297 269 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 SNAP29O95721 258 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 LCATP04180 440 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 GYPBP06028 91 aa6.94□□□□□ -1.3
USP40-216ENST00000485943 ANXA2P07355 339 aaKnown RBP6.94□□□□□ -1.3
USP40-216ENST00000485943 ADRA2AP08913 450 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms