RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 DUS4LO95620 317 aaKnown RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 ASAH2BP0C7U1 165 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 ZNF806P0C7X5 589 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 PTGFRP43088 359 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 ASPHD2Q6ICH7 369 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 OR4S1Q8NGB4 309 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 PTX4Q96A99 478 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 AMELYQ99218 206 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 LPAR4Q99677 370 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 CMKLR1Q99788 373 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 NKX3-1Q99801 234 aaPredicted RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 APOOQ9BUR5 198 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 NMES1Q9C002 83 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 SYT4Q9H2B2 425 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 UBE2ZQ9H832 354 aaPredicted RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 PRMT8Q9NR22 394 aaPredicted RBP11.96□□□□□ -0.49
USP40-214ENST00000483519 LPAR3Q9UBY5 353 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 SHPKQ9UHJ6 478 aa11.96□□□□□ -0.49
USP40-214ENST00000483519 LINC00587B1AMM8 73 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 LINC01565O15544 149 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 S1PR1P21453 382 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 IGFALSP35858 605 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 CX3CR1P49238 355 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 RAB38P57729 211 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 RPL18Q07020 188 aaKnown RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 GFOD2Q3B7J2 385 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 AWAT2Q6E213 333 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 VITQ6UXI7 678 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 TMEM200AQ86VY9 491 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 ZNF679Q8IYX0 411 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 RNF128Q8TEB7 428 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 RYDENQ9NUL5 291 aaKnown RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 TAS2R4Q9NYW5 299 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 LRIT1Q9P2V4 623 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 CD207Q9UJ71 328 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SLC22A13Q9Y226 551 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 NOSIPQ9Y314 301 aaKnown RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 TMED7Q9Y3B3 224 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SPTBP11277 2137 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 C13orf42A0A1B0GVH6 325 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 METTL21EPA6NDL7 271 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 EML2O95834 649 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 ADH1BP00325 375 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 C5AR1P21730 350 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 NFYBP25208 207 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 PAX6P26367 422 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 ECH1Q13011 328 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SMAD2Q15796 467 aaKnown RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 IGSF11Q5DX21 431 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 PRRT3Q5FWE3 981 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 TEX30Q5JUR7 227 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 FAM209BQ5JX69 171 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 NPSR1Q6W5P4 371 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 ATG4DQ86TL0 474 aaPredicted RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 PAQR4Q8N4S7 273 aaPredicted RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 OR10R2Q8NGX6 335 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 OR10G6Q8NH81 332 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 FAM174AQ8TBP5 190 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 ASB5Q8WWX0 329 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SAT2Q96F10 170 aaPredicted RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 NUDT9Q9BW91 350 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 FGF22Q9HCT0 170 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SMCO4Q9NRQ5 59 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SLC22A11Q9NSA0 550 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 CGGBP1Q9UFW8 167 aaPredicted RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 MRPS18BQ9Y676 258 aaKnown RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 PRSS38A1L453 326 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 CPED1A4D0V7 1026 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 C1orf196B1AJZ1 125 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 LDLRAD4O15165 306 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 HLA-DQA2P01906 255 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 IGFBP3P17936 291 aaPredicted RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 MAOAP21397 527 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 PTAFRP25105 342 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SNRPEP62304 92 aaKnown RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 SMCO1Q147U7 214 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 PDGFRLQ15198 375 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SLC18B1Q6NT16 456 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 TRAPPC6BQ86SZ2 158 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 MISPQ8IVT2 679 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 JAGN1Q8N5M9 183 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 OR4C3Q8NH37 302 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 NUDCD2Q8WVJ2 157 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 SCARF2Q96GP6 870 aaPredicted RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 SLC25A44Q96H78 314 aaPredicted RBP11.95□□□□□ -0.5
USP40-214ENST00000483519 SLC17A9Q9BYT1 436 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 RHOFQ9HBH0 211 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 ACKR4Q9NPB9 350 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 CLEC1BQ9P126 229 aa11.95□□□□□ -0.5
USP40-214ENST00000483519 FITM1A5D6W6 292 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 KCNAB3O43448 404 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 KAT7O95251 611 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 GPANK1O95872 356 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 S100A6P06703 90 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 ERCC1P07992 297 aaPredicted RBP11.94□□□□□ -0.5
USP40-214ENST00000483519 FAM157CP0CG43 387 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 AKR1C4P17516 323 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 RAB6AP20340 208 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 SERPINF1P36955 418 aa11.94□□□□□ -0.5
USP40-214ENST00000483519 CAV2P51636 162 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms