RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 OR8G5Q8NG78 346 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 FBXO25Q8TCJ0 367 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 IFT81Q8WYA0 676 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 PTP4A1Q93096 173 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 SLC35B4Q969S0 331 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 FOXRED1Q96CU9 486 aaPredicted RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 ZNF582Q96NG8 517 aaPredicted RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 TRNT1Q96Q11 434 aaKnown RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 KCNA7Q96RP8 456 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 RAB17Q9H0T7 212 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 MID1IP1Q9NPA3 183 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 MRPL39Q9NYK5 338 aaKnown RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 RNF7Q9UBF6 113 aa6.46□□□□□ -1.38
USP54-211ENST00000474929 SIRT4Q9Y6E7 314 aaPredicted RBP6.46□□□□□ -1.38
USP54-211ENST00000474929 HERC1Q15751 4861 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 OOEPA6NGQ2 149 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 NKX6-3A6NJ46 265 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 NUDT19A8MXV4 375 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 OR6A2O95222 327 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 CHEK2O96017 543 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 COX5BP10606 129 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 HLA-DOBP13765 273 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 ZNF32P17041 273 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 ATP5F1P24539 256 aaPredicted RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 MRPS34P82930 218 aaKnown RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 CAV1Q03135 178 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 EGR4Q05215 589 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 KLRD1Q13241 179 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 OR8B8Q15620 311 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 MS4A18Q3C1V0 323 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 FAM201AQ5SY85 155 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 ZDHHC24Q6UX98 284 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 LRRC74BQ6ZQY2 392 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 SLC36A1Q7Z2H8 476 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 C16orf82Q7Z2V1 217 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 ZNF572Q7Z3I7 529 aaPredicted RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 LCA5Q86VQ0 697 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 NUDCD3Q8IVD9 361 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 LRRC18Q8N456 261 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 CLDN22Q8N7P3 220 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 MNS1Q8NEH6 495 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 TNFRSF14Q92956 283 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 CMBLQ96DG6 245 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 MRRFQ96E11 262 aaKnown RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 L3HYPDHQ96EM0 354 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 P2RX4Q99571 388 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 CPPED1Q9BRF8 314 aaPredicted RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 WACQ9BTA9 647 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 MTHFD2LQ9H903 347 aaPredicted RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 ZFP57Q9NU63 452 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 KLHL14Q9P2G3 628 aa6.45□□□□□ -1.38
USP54-211ENST00000474929 STX18Q9P2W9 335 aaKnown RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 PRPF19Q9UMS4 504 aaKnown RBP6.45□□□□□ -1.38
USP54-211ENST00000474929 FAM20BO75063 409 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 LAMP1P11279 417 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 ETFAP13804 333 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 PMELP40967 661 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 CD200P41217 278 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 GUCA1AP43080 201 aaPredicted RBP6.44□□□□□ -1.38
USP54-211ENST00000474929 MAGEA12P43365 314 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 HTR5AP47898 357 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 LUMP51884 338 aaPredicted RBP6.44□□□□□ -1.38
USP54-211ENST00000474929 LGALS4P56470 323 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 CLRN1P58418 232 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 RPL23AP62750 156 aaKnown RBP6.44□□□□□ -1.38
USP54-211ENST00000474929 HBA1P69905 142 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 FUT5Q11128 374 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 ECH1Q13011 328 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 LIPMQ5VYY2 423 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 TNFAIP8L2Q6P589 184 aaPredicted RBP6.44□□□□□ -1.38
USP54-211ENST00000474929 WDR88Q6ZMY6 472 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 OLIG3Q7RTU3 272 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 OVCH2Q7RTZ1 564 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 ARMC8Q8IUR7 673 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 PLPP7Q8NBV4 271 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 OR5L1Q8NGL2 311 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 CAPSLQ8WWF8 208 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 RORBQ92753 470 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 TAAR8Q969N4 342 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 TXNDC15Q96J42 360 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 SLC38A1Q9H2H9 487 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 POFUT1Q9H488 388 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 SMURF2Q9HAU4 748 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 KCNK9Q9NPC2 374 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 CALML5Q9NZT1 146 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 SELENONQ9NZV5 590 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 AURKCQ9UQB9 309 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 CCL27Q9Y4X3 112 aa6.44□□□□□ -1.38
USP54-211ENST00000474929 WDR91A4D1P6 747 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 A6NDX4 124 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 SEC14L6B5MCN3 397 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 POLR3GO15318 223 aaPredicted RBP6.43□□□□□ -1.38
USP54-211ENST00000474929 HDAC3O15379 428 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 SERPINI2O75830 405 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 HPRP00739 348 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 MT-ATP6P00846 226 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 VIMP08670 466 aaKnown RBP6.43□□□□□ -1.38
USP54-211ENST00000474929 GKN3PP0CG01 181 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 PGA4P0DJD7 388 aa6.43□□□□□ -1.38
USP54-211ENST00000474929 PGA3P0DJD8 388 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms