RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 NOS1APO75052 506 aaPredicted RBP17.02■□□□□ 0.31
VIM-203ENST00000469543 RGS11O94810 467 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 LDOC1O95751 146 aaPredicted RBP17.02■□□□□ 0.31
VIM-203ENST00000469543 CD2P06729 351 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 IGFBP3P17936 291 aaPredicted RBP17.02■□□□□ 0.31
VIM-203ENST00000469543 EPHA8P29322 1005 aaPredicted RBP17.02■□□□□ 0.31
VIM-203ENST00000469543 EXOSC2Q13868 293 aaKnown RBP17.02■□□□□ 0.31
VIM-203ENST00000469543 HLA-BQ31612 363 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 ST8SIA1Q92185 356 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 SEH1LQ96EE3 360 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 TINAGL1Q9GZM7 467 aaPredicted RBP17.02■□□□□ 0.31
VIM-203ENST00000469543 HHLA2Q9UM44 414 aa17.02■□□□□ 0.31
VIM-203ENST00000469543 GPR179Q6PRD1 2367 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 LOC100509620A0A075B734 347 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 A0A1W2PPL8 197 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 TMEM235A6NFC5 223 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 WIPF3A6NGB9 483 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 CREBL2O60519 120 aaPredicted RBP17.01■□□□□ 0.31
VIM-203ENST00000469543 H2BFMP0C1H6 154 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 MRPS10P82664 201 aaKnown RBP17.01■□□□□ 0.31
VIM-203ENST00000469543 DCAF12L2Q5VW00 463 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 CFAP77Q6ZQR2 320 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 MUC20Q8N307 709 aaPredicted RBP17.01■□□□□ 0.31
VIM-203ENST00000469543 OR5B2Q96R09 309 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 FARSAQ9Y285 508 aaKnown RBP17.01■□□□□ 0.31
VIM-203ENST00000469543 CXCL2P19875 107 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 ACY1Q03154 408 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 RSPO4Q2I0M5 234 aaPredicted RBP17.01■□□□□ 0.31
VIM-203ENST00000469543 ZNF385CQ66K41 422 aaPredicted RBP17.01■□□□□ 0.31
VIM-203ENST00000469543 ZNF626Q68DY1 528 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 GALNT16Q8N428 558 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 CLEC1AQ8NC01 280 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 OR52N4Q8NGI2 321 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 NUBPLQ8TB37 319 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 SAP25Q8TEE9 199 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 DDIT4LQ96D03 193 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 ADAT3Q96EY9 351 aaPredicted RBP17.01■□□□□ 0.31
VIM-203ENST00000469543 RBP7Q96R05 134 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 SLC5A6Q9Y289 635 aa17.01■□□□□ 0.31
VIM-203ENST00000469543 NCOA6Q14686 2063 aaPredicted RBP17■□□□□ 0.31
VIM-203ENST00000469543 ACSM4P0C7M7 580 aa17■□□□□ 0.31
VIM-203ENST00000469543 LIPCP11150 499 aa17■□□□□ 0.31
VIM-203ENST00000469543 GNALP38405 381 aa17■□□□□ 0.31
VIM-203ENST00000469543 ZNF41P51814 821 aaPredicted RBP17■□□□□ 0.31
VIM-203ENST00000469543 PRKXP51817 358 aa17■□□□□ 0.31
VIM-203ENST00000469543 PLPPR5Q32ZL2 321 aa17■□□□□ 0.31
VIM-203ENST00000469543 C17orf107Q6ZR85 190 aa17■□□□□ 0.31
VIM-203ENST00000469543 SLC36A1Q7Z2H8 476 aa17■□□□□ 0.31
VIM-203ENST00000469543 CLDN23Q96B33 292 aa17■□□□□ 0.31
VIM-203ENST00000469543 LYSMD4Q5XG99 296 aa17■□□□□ 0.31
VIM-203ENST00000469543 GLT8D1Q68CQ7 371 aa17■□□□□ 0.31
VIM-203ENST00000469543 WDSUB1Q8N9V3 476 aa17■□□□□ 0.31
VIM-203ENST00000469543 MAFAQ8NHW3 353 aaPredicted RBP17■□□□□ 0.31
VIM-203ENST00000469543 SLAMF6Q96DU3 332 aa17■□□□□ 0.31
VIM-203ENST00000469543 CNTD2Q9H8S5 307 aa17■□□□□ 0.31
VIM-203ENST00000469543 TTRP02766 147 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 MNDAP41218 407 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 DAP3P51398 398 aaKnown RBP16.99■□□□□ 0.31
VIM-203ENST00000469543 RBMS2Q15434 407 aaKnown RBP16.99■□□□□ 0.31
VIM-203ENST00000469543 NKPD1Q17RQ9 610 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 SFRP5Q5T4F7 317 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 STEAP1BQ6NZ63 245 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 PPP1R3BQ86XI6 285 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 SLC39A7Q92504 469 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 RASL10BQ96S79 203 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 PRAF2O60831 178 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 POU3F2P20265 443 aaPredicted RBP16.99■□□□□ 0.31
VIM-203ENST00000469543 TMED4Q7Z7H5 227 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 MISPQ8IVT2 679 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 ZNF275Q9NSD4 429 aaPredicted RBP16.99■□□□□ 0.31
VIM-203ENST00000469543 ZNF319Q9P2F9 582 aa16.99■□□□□ 0.31
VIM-203ENST00000469543 ARID1AO14497 2285 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 AHCTF1Q8WYP5 2266 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 RER1O15258 196 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 CFIP05156 583 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 ZP4Q12836 540 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 GFOD2Q3B7J2 385 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 TMEM176BQ3YBM2 270 aaPredicted RBP16.98■□□□□ 0.31
VIM-203ENST00000469543 CD163Q86VB7 1156 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 GVQW1Q8N7I0 195 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 ZNF454Q8N9F8 522 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 ELMOD3Q96FG2 381 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 TMEM138Q9NPI0 162 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 RABL2AQ9UBK7 228 aaPredicted RBP16.98■□□□□ 0.31
VIM-203ENST00000469543 CYB5R1Q9UHQ9 305 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 RABL2BQ9UNT1 228 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 WIF1Q9Y5W5 379 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 MYO7BQ6PIF6 2116 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 C5orf63A6NC05 138 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 P2RX3P56373 397 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 NR0B2Q15466 257 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 PCK2Q16822 640 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 OR51E1Q8TCB6 317 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 GPX8Q8TED1 209 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 RNF133Q8WVZ7 376 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 C1QTNF6Q9BXI9 259 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 FAM206AQ9NX38 181 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 FBXO4Q9UKT5 387 aa16.98■□□□□ 0.31
VIM-203ENST00000469543 URB1O60287 2271 aaKnown RBP16.98■□□□□ 0.31
VIM-203ENST00000469543 A6NIZ1 184 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms