RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 ATG12O94817 140 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 MT-ATP6P00846 226 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 MT-ND4P03905 459 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 ITGA5P08648 1049 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 AKR1C4P17516 323 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 GDNFP39905 211 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 PPT1P50897 306 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SQSTM1Q13501 440 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 RIN1Q13671 783 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 IRF3Q14653 427 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SMUG1Q53HV7 270 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 APOOLQ6UXV4 268 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 ARHGEF39Q8N4T4 335 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SIRT6Q8N6T7 355 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 IL17RDQ8NFM7 739 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SPACA9Q96E40 222 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 TMEM43Q9BTV4 400 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 LOC102725191A0A1B0GVB3 256 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SNRPGP15A8MWD9 76 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 BHLHE40O14503 412 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 TAAR5O14804 337 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 DIRAS3O95661 229 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 WNT11O96014 354 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 HCKP08631 526 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 HOXD4P09016 255 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 IFNGR1P15260 489 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 LIPAP38571 399 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 RAG2P55895 527 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 NDUFA6P56556 154 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 ZNF620Q6ZNG0 422 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 BCORP1Q8N888 145 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 TMEM52Q8NDY8 209 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 GPR148Q8TDV2 347 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SAMD10Q9BYL1 202 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 TSPAN10Q9H1Z9 355 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 B3GALT1Q9Y5Z6 326 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 TMEM82A0PJX8 343 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SLC35F4A4IF30 521 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 H3BML4 177 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 MRPL33O75394 65 aaKnown RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 RAD51DO75771 328 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SCGB1D1O95968 90 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 CTRB1P17538 263 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 CD53P19397 219 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 EMDP50402 254 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 FOXK2Q01167 660 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SPIN3Q5JUX0 258 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 CTRB2Q6GPI1 263 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 PWWP2BQ6NUJ5 590 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 C17orf107Q6ZR85 190 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 MRGPREQ86SM8 312 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 OR52N1Q8NH53 320 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 ZNF582Q96NG8 517 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 SIGLEC11Q96RL6 698 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 NIPSNAP3BQ9BS92 247 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 MRPS18AQ9NVS2 196 aaKnown RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 GAR1Q9NY12 217 aaKnown RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 ZNF223Q9UK11 482 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 TRABD2BA6NFA1 517 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SMAD9O15198 467 aaKnown RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 FRS3O43559 492 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 ELK1P19419 428 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 ENPP1P22413 925 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 RNF4P78317 190 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SNTB1Q13884 538 aaKnown RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 NIPAL3Q6P499 406 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 TMPRSS11FQ6ZWK6 438 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 NAA40Q86UY6 237 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 LNX2Q8N448 690 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 ZSCAN4Q8NAM6 433 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 AKR7LQ8NHP1 331 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 SPRYD4Q8WW59 207 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 VPS25Q9BRG1 176 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 LAT2Q9GZY6 243 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 TOLLIPQ9H0E2 274 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 FGF20Q9NP95 211 aaPredicted RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 EXOSC3Q9NQT5 275 aaKnown RBP6.94□□□□□ -1.3
USP54-210ENST00000466048 CENPMQ9NSP4 180 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 WASF3Q9UPY6 502 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 VDAC3Q9Y277 283 aa6.94□□□□□ -1.3
USP54-210ENST00000466048 TMEM72A0PK05 275 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 KDM4EB2RXH2 506 aaPredicted RBP6.93□□□□□ -1.3
USP54-210ENST00000466048 ZNF587BE7ETH6 402 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 MAGEB4O15481 346 aaPredicted RBP6.93□□□□□ -1.3
USP54-210ENST00000466048 PNPP00491 289 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 CT62P0C5K7 136 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 GABRA1P14867 456 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 PTGER4P35408 488 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 CSNK1A1P48729 337 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 LBHQ53QV2 105 aaPredicted RBP6.93□□□□□ -1.3
USP54-210ENST00000466048 GPR157Q5UAW9 335 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 PRAMEF20Q5VT98 475 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 NXNL2Q5VZ03 156 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 NLRC3Q7RTR2 1065 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 SFTPA2Q8IWL1 248 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 CNEP1R1Q8N9A8 125 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 OR5AK2Q8NH90 309 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 YIPF5Q969M3 257 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 BPIFA2Q96DR5 249 aa6.93□□□□□ -1.3
USP54-210ENST00000466048 MRGPRX4Q96LA9 322 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms